Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03222 ATGGGGACAGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAGTGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCGCACCCTTACCTCTGGGGAGGTCAGCATCCTCTGATGTCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACTGTGACTCCTGGCTCTGTACCAATCAATGCTGAATATGAAGGGAAATCCCCTGATGGAAAAGAAAGGGTCTCAAAAAAATCCAAGGGCATGTCAGGAAATACTGCTTCAGGTGGCGGTAGGACTGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAGGGCAGTGATGAGAATGGTAACCAACAGGAATTTGCTGCCAACAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACAGGTGGACCAAATGCTAAATCTTCAGTGACTGGGAAACCCATCGCCAACATTCCTGGAACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCAATGCAGGTTCAGGGGCTGGAAAAGTGAGAGGAAATGCTGTCTCATCAGCTATTGTTACTGTACCGATGGTTGGTCGTGATGGTATGATGCCTGAACAATGGGTTCAAGACGAACGGGAGCTAAAAAGACAGAAGAGGAAGCAGTCTAACCGAGAGTCTGCCAGGAGATCAAGATTACGCAAGCAGGCGGAGTGTGAAGAACTACAAGCGAGAGTGCAGACATTGAACAACGAAAACCGTACTCTCAGGGACGAGTTACAAAGGCTCTCCGAGGAATGTGAAAAGCTAACATCAGAGAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAAACGCTGCACCACCTGCTCAATCTCGAGGCGGCGAAGGCAAAGATTAA 1101 48.14 MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMSPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERVSKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENGNQQEFAANKKGSFNQMLADGANAQNNTGGPNAKSSVTGKPIANIPGTNLNMGMDLWNTTNAGSGAGKVRGNAVSSAIVTVPMVGRDGMMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGNAAPPAQSRGGEGKD* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27264439 27267123 + CsaV3_6G046080.1 Csa06g03222 534849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03222 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 289 IPR004827 GO:0003700|GO:0006355
Csa06g03222 366 MobiDBLite consensus disorder prediction 189 210 - -
Csa06g03222 366 Pfam bZIP transcription factor 267 329 IPR004827 GO:0003700|GO:0006355
Csa06g03222 366 Coils Coil 280 335 - -
Csa06g03222 366 PANTHER G-BOX-BINDING FACTOR 1 1 364 - -
Csa06g03222 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 269 332 IPR004827 GO:0003700|GO:0006355
Csa06g03222 366 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Csa06g03222 366 MobiDBLite consensus disorder prediction 347 366 - -
Csa06g03222 366 CDD bZIP_plant_GBF1 272 322 IPR045314 GO:0003700|GO:0006355
Csa06g03222 366 Gene3D - 270 325 - -
Csa06g03222 366 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 364 IPR044827 GO:0003700|GO:0006355|GO:0043565
Csa06g03222 366 SUPERFAMILY Leucine zipper domain 270 326 IPR046347 GO:0003700|GO:0006355
Csa06g03222 366 MobiDBLite consensus disorder prediction 105 172 - -
Csa06g03222 366 MobiDBLite consensus disorder prediction 260 289 - -
Csa06g03222 366 MobiDBLite consensus disorder prediction 261 276 - -
Csa06g03222 366 SMART brlzneu 267 331 IPR004827 GO:0003700|GO:0006355
Csa06g03222 366 MobiDBLite consensus disorder prediction 123 172 - -
Csa06g03222 366 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00836 Csa-Chr3:7108899 Csa06g03222 Csa-Chr6:27264439 5.18E-51 dispersed
Csa03g04575 Csa-Chr3:39806582 Csa06g03222 Csa-Chr6:27264439 8.59E-66 dispersed
Csa06g03222 Csa-Chr6:27264439 Csa04g00988 Csa-Chr4:7633782 3.54E-12 dispersed
Csa06g03222 Csa-Chr6:27264439 Csa03g00131 Csa-Chr3:1007649 6.10E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32158 PF07777 MFMR 4.50E-32 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03222 K09060 - csv:101217128 710.294