Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03222 | ATGGGGACAGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAGTGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCGCACCCTTACCTCTGGGGAGGTCAGCATCCTCTGATGTCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACTGTGACTCCTGGCTCTGTACCAATCAATGCTGAATATGAAGGGAAATCCCCTGATGGAAAAGAAAGGGTCTCAAAAAAATCCAAGGGCATGTCAGGAAATACTGCTTCAGGTGGCGGTAGGACTGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAGGGCAGTGATGAGAATGGTAACCAACAGGAATTTGCTGCCAACAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACAGGTGGACCAAATGCTAAATCTTCAGTGACTGGGAAACCCATCGCCAACATTCCTGGAACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCAATGCAGGTTCAGGGGCTGGAAAAGTGAGAGGAAATGCTGTCTCATCAGCTATTGTTACTGTACCGATGGTTGGTCGTGATGGTATGATGCCTGAACAATGGGTTCAAGACGAACGGGAGCTAAAAAGACAGAAGAGGAAGCAGTCTAACCGAGAGTCTGCCAGGAGATCAAGATTACGCAAGCAGGCGGAGTGTGAAGAACTACAAGCGAGAGTGCAGACATTGAACAACGAAAACCGTACTCTCAGGGACGAGTTACAAAGGCTCTCCGAGGAATGTGAAAAGCTAACATCAGAGAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAAACGCTGCACCACCTGCTCAATCTCGAGGCGGCGAAGGCAAAGATTAA | 1101 | 48.14 | MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMSPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERVSKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENGNQQEFAANKKGSFNQMLADGANAQNNTGGPNAKSSVTGKPIANIPGTNLNMGMDLWNTTNAGSGAGKVRGNAVSSAIVTVPMVGRDGMMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGNAAPPAQSRGGEGKD* | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27264439 | 27267123 | + | CsaV3_6G046080.1 | Csa06g03222 | 534849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03222 | 366 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 274 | 289 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 189 | 210 | - | - | |
Csa06g03222 | 366 | Pfam | bZIP transcription factor | 267 | 329 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g03222 | 366 | Coils | Coil | 280 | 335 | - | - | |
Csa06g03222 | 366 | PANTHER | G-BOX-BINDING FACTOR 1 | 1 | 364 | - | - | |
Csa06g03222 | 366 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 269 | 332 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g03222 | 366 | Pfam | G-box binding protein MFMR | 1 | 94 | IPR012900 | - | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 347 | 366 | - | - | |
Csa06g03222 | 366 | CDD | bZIP_plant_GBF1 | 272 | 322 | IPR045314 | GO:0003700|GO:0006355 | |
Csa06g03222 | 366 | Gene3D | - | 270 | 325 | - | - | |
Csa06g03222 | 366 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 364 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03222 | 366 | SUPERFAMILY | Leucine zipper domain | 270 | 326 | IPR046347 | GO:0003700|GO:0006355 | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 105 | 172 | - | - | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 260 | 289 | - | - | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 261 | 276 | - | - | |
Csa06g03222 | 366 | SMART | brlzneu | 267 | 331 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 123 | 172 | - | - | |
Csa06g03222 | 366 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00836 | Csa-Chr3:7108899 | Csa06g03222 | Csa-Chr6:27264439 | 5.18E-51 | dispersed | |
Csa03g04575 | Csa-Chr3:39806582 | Csa06g03222 | Csa-Chr6:27264439 | 8.59E-66 | dispersed | |
Csa06g03222 | Csa-Chr6:27264439 | Csa04g00988 | Csa-Chr4:7633782 | 3.54E-12 | dispersed | |
Csa06g03222 | Csa-Chr6:27264439 | Csa03g00131 | Csa-Chr3:1007649 | 6.10E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32158 | PF07777 | MFMR | 4.50E-32 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03222 | K09060 | - | csv:101217128 | 710.294 |