Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03224 ATGAAGAAACACTCAGCAGTTTCAGTTTCAGGATCGTCGTTTTCACCTTCAATTCTTATCCCCATCTTCTTCCTTTTCCTCTCTCTTCCTGCATATGCCGATGACGGGTGGTGGGAAGGAGACACTCCTGTGGTGAAGAGAGCCAATGAAAGAATCCCAATTCTTAAAACAGAGTACGGTGAGATCTCCGCCGTTGATTTCGACGATGGCACTCGATTTGGACGTTACCATCTCCAGTTCATCACATTGGAACCCAATTCACTGTTTCTCCCTGTTCTTCTTCATTCTGATATGGTGTTCTATGTCCACACTGGAAGTGGGAGATTGAATTGGTTTGATGACAATGATTTGAAGGAGGTGGATTTACGGCGGGGAGATCTTTATAGGCTTCATCCAGGTTCCATTTTTTACTTGCAGAGTAGCTTAGAGACCGAACGTGAAAAGCTTCGAATTTATGCTCTGTTTTCCAGCACAGATGAAGATTCATTCAATCCTTCCATTGGAGCATACTCCCGCGTCACTGATCTGGTTCGGGGCTTCGGCAAAGAAGTTCTTCGTAAAGCTTTCATGGCCCCTGATGAAGTAATAGAGGAAATAATGAACGCTAAGAGGCCGCCGCTTATCGTCCACGCTGCTGCGCCAACTCCGAGCATAAAGGCAAAGTCGTCGTCACCATGGGAATTTGAGGCTCGGTTATTGAAATCTTTCCTAGGAGGAGACGCAAGTGCGATAGAATTCAACAAGAAGAAGAAGAAGAAAGGCATATACAACGTTTATGAAGTAGACCCTGATTTTGAGAATTGCAATGGATGGAGTTTGACTGTAACCAAGAAAAACTCCCATCAATTGAAAGGCTCCAACATCGGCTTCCTCGTAGTCAACCTTACAGCGGGTTCAATGATGGGTCCGCATTGGAATCCGAGGGCGTGGGAGATTGGGATTGTGACATCGGATGAGCCGGGGGTGATTCGTGTAGGGTGTTCGAGCACCTCGGCGAACAGTTCAAAATGCAAGAATTGGAGTTTTGTGGTAGAGAAAGGGGATGTATTTGTAGTGCCAAGGTTCCATCCAATGGCGCAAATGTCATTCAACAACGGAACGTTTGTATTTGTGGGATTTAGCACAACGAATGGACATAACATGCCGCAGTTCTTTGCTGGGAGCAGCTCTGTTTTGAAAATTGTGGACAGGGAAGTATTGGCATGGTCGTTTGATGTGAATGTGACAACGATTGATCGGTTGTTGAAAGCTAGAGTTGAGTCGATTGTTTTGGAATGTACTTCATGTGCTGAAGAGGAAGTAAGGAAAATGGAAGAGGAAGCTGAGAGAGAGAGGGAGGAGGAAGAAGAGAGAAAGAGAGAAGAGGAGGAACGTAGGAAGAGAGAGGAAGAAGAAGAGAGAAAAAGGGAAGAAGAGGAACGTAGGAAGAGAGAGGAAGAGGAAGAGAGGAAACGGGAAGAAGAAGAACGGAGGAAGAGAGAGGAAGAGGAAGAGAAGAAACGGGAAGAAGAGGAAGAGAGGAAGAGAGAGGAAGAGGAAGAGAAGAAACGGGAAGAAGAAGAAGAGAGAAAAAGGGAAGAAGAGGAACGGAGAAAGAGAGAGGAAGAGGAAGAGAGGAAACGGGAAGAAGAAGAAGAAGAGGAAGAGAGGGAGAGAGAAGAAGAGGAAGCACAGAAAGAGGAAGAGAGGAGGAGAGAAGAGGAAGAGAGGAGGAGGAGAGAAGAGGAAGAGAGAAAAAGAGAGGAAGAGGAGAGAGAGAGAGAGAAAGAGAGAGGAGAGGAGGAACAGAGGAGGAGAGAAGAAGAAGAGGAAGAAGAAGAAGAGAGGGAGGCAGAGAGAGAGGAGGAGGAAGCTAGGAAAAGAGAGGAAGAACATCAAAGAGAGAGAGGGAAGAGGCGGAGAGAGGGGGAGGAAAGACAAAGAAGACGGTGGGAGGAAGAGGAAGAAGAAGGTGGAGGAGAGGAGCCGCAGCTGCCACTCGCAGTACTAAGAATTTTGGAACAATGGACTTAA 2013 46.55 MKKHSAVSVSGSSFSPSILIPIFFLFLSLPAYADDGWWEGDTPVVKRANERIPILKTEYGEISAVDFDDGTRFGRYHLQFITLEPNSLFLPVLLHSDMVFYVHTGSGRLNWFDDNDLKEVDLRRGDLYRLHPGSIFYLQSSLETEREKLRIYALFSSTDEDSFNPSIGAYSRVTDLVRGFGKEVLRKAFMAPDEVIEEIMNAKRPPLIVHAAAPTPSIKAKSSSPWEFEARLLKSFLGGDASAIEFNKKKKKKGIYNVYEVDPDFENCNGWSLTVTKKNSHQLKGSNIGFLVVNLTAGSMMGPHWNPRAWEIGIVTSDEPGVIRVGCSSTSANSSKCKNWSFVVEKGDVFVVPRFHPMAQMSFNNGTFVFVGFSTTNGHNMPQFFAGSSSVLKIVDREVLAWSFDVNVTTIDRLLKARVESIVLECTSCAEEEVRKMEEEAEREREEEEERKREEEERRKREEEEERKREEEERRKREEEEERKREEEERRKREEEEEKKREEEEERKREEEEEKKREEEEERKREEEERRKREEEEERKREEEEEEEEREREEEEAQKEEERRREEEERRRREEEERKREEEEREREKERGEEEQRRREEEEEEEEEREAEREEEEARKREEEHQRERGKRRREGEERQRRRWEEEEEEGGGEEPQLPLAVLRILEQWT* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27273825 27276272 + CsaV3_6G046100.1 Csa06g03224 534851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03224 670 CDD cupin_7S_vicilin-like_C 263 421 - -
Csa06g03224 670 SUPERFAMILY RmlC-like cupins 23 418 IPR011051 -
Csa06g03224 670 MobiDBLite consensus disorder prediction 482 670 - -
Csa06g03224 670 MobiDBLite consensus disorder prediction 540 555 - -
Csa06g03224 670 Gene3D Jelly Rolls 245 429 IPR014710 -
Csa06g03224 670 Coils Coil 427 647 - -
Csa06g03224 670 PANTHER OS03G0336100 PROTEIN-RELATED 19 476 - -
Csa06g03224 670 Gene3D Jelly Rolls 39 223 IPR014710 -
Csa06g03224 670 SMART Cupin_1_3 46 197 IPR006045 -
Csa06g03224 670 SMART Cupin_1_3 256 412 IPR006045 -
Csa06g03224 670 CDD cupin_7S_vicilin-like_N 54 211 - -
Csa06g03224 670 PANTHER PREPROMP73 19 476 - -
Csa06g03224 670 MobiDBLite consensus disorder prediction 556 598 - -
Csa06g03224 670 Pfam Cupin 256 410 IPR006045 -
Csa06g03224 670 MobiDBLite consensus disorder prediction 482 539 - -
Csa06g03224 670 MobiDBLite consensus disorder prediction 613 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03224 - - - csv:101216660 838.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01309 Csa-Chr3:10007207 Csa06g03224 Csa-Chr6:27273825 2.18E-11 dispersed
Csa06g01671 Csa-Chr6:14643563 Csa06g03224 Csa-Chr6:27273825 3.12E-36 dispersed
Csa06g03224 Csa-Chr6:27273825 Csa07g01685 Csa-Chr7:17326375 1.67E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28