Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03225 ATGCCAGCCGATTTAGAGAATTCCCCGTCGGTTTCCGGGGAACCTACTGTCTCTTCCCTTGGAAACACCGATCCGCCGCCCAAATCCACCGTTAAGAAAAAAAGAAATCTACCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTCTCCCCGAAGACCCTTTTGGCCACCAATCGATTTGTTTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTTCATCGGCGTGGTCATAATCTTCCATGGAAGCTCCGGCAAAGGTCTAGTAATGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGACTTCTTGTGTTCATCACGATCCTTCTAGAGCTCTGGGGGATTTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACTAGAGAATACAAATGCGATTGTGGTACTCTTTTTTCCAGAAGGGATAGCTTCATTACCCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTAATTCTTCTCAGAAAGCGGTGGAGCCGGTGGAGCCAAATCCAAAGCTATCTCCGCCGCCGTCACCTCCGGCGGCTGCATCTCCTCCTCAATCAGCTTGTGTTCTATCTCCTCCCGTTTTGCCGATTCAAAGTCAAGATCAATCGGAGAATCCATCCCAATATAATGAAGAAGCACCTGTTACCACGGGCATGAGTGGTAGCTGCAGCAGCAGCAAGAGTCCGAGCAGCAACAGCAGTTCGAGTAGTCGATTTGCTAGCTTGTTTGCTTCCACAACTACATCCATAAGCCTGCAACCTCCTCAACCCCCCGCATTTACTGACATGATACATGTTATGGCTTGTTCGGATCCCTCATCTGACTATGCTCCAACGACGTCTACCGAGCCTATTTCTCTCTGTCTTTCAACTACCCACGGGGCATCAATTTTTGGGGCTGCTAGCCAAGACCTCCGACAGTACACACCAGCTCCGCAACCTGCAATGTCCGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCGGCAGCTTCAAATGCCTCATTCCTTCGCGGTTTAGGCTTAGTACCATCCTCCTCTTCGGCTACGCCACAAGAGAGCTCGCCATGGAATCAAAGGCAAGTTGAACCAGATGGAATCTCAATCGCTGCAGGGCTTGGGCTTGGACTCCCTTGCGATGGGAACTCTGGACTGAAAGAACTAATGAGAGGCAACCATTCACTATTTGCTCCGAAACACACTACTCTTGATTTCCTCGGATTGGGTATGGCAGCTGGTGGTAGCCCCAACAACAGAGGATTGGCTGCACTAATCACATCGATCGGCGGAGGCATGGATGTTGGCACAACGACTGGATCCTACGGAGGTGGTGACATATCGAGCAAAGATATGAATAGAAACAATTAA 1524 49.08 MPADLENSPSVSGEPTVSSLGNTDPPPKSTVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVKKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVDKPVSNSSQKAVEPVEPNPKLSPPPSPPAAASPPQSACVLSPPVLPIQSQDQSENPSQYNEEAPVTTGMSGSCSSSKSPSSNSSSSSRFASLFASTTTSISLQPPQPPAFTDMIHVMACSDPSSDYAPTTSTEPISLCLSTTHGASIFGAASQDLRQYTPAPQPAMSATALLQKAAQMGAAASNASFLRGLGLVPSSSSATPQESSPWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSLFAPKHTTLDFLGLGMAAGGSPNNRGLAALITSIGGGMDVGTTTGSYGGGDISSKDMNRNN* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27277593 27280809 - CsaV3_6G046110.1 Csa06g03225 534852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03225 507 MobiDBLite consensus disorder prediction 199 214 - -
Csa06g03225 507 Gene3D Classic Zinc Finger 41 111 - -
Csa06g03225 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Csa06g03225 507 MobiDBLite consensus disorder prediction 1 43 - -
Csa06g03225 507 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Csa06g03225 507 MobiDBLite consensus disorder prediction 9 26 - -
Csa06g03225 507 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Csa06g03225 507 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Csa06g03225 507 MobiDBLite consensus disorder prediction 243 288 - -
Csa06g03225 507 MobiDBLite consensus disorder prediction 218 233 - -
Csa06g03225 507 Gene3D Classic Zinc Finger 130 196 - -
Csa06g03225 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 506 - -
Csa06g03225 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 506 - -
Csa06g03225 507 SMART c2h2final6 137 157 IPR013087 -
Csa06g03225 507 SMART c2h2final6 61 83 IPR013087 -
Csa06g03225 507 SMART c2h2final6 102 132 IPR013087 -
Csa06g03225 507 MobiDBLite consensus disorder prediction 196 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02630 Csa-Chr2:22847054 Csa06g03225 Csa-Chr6:27277593 5.83E-113 dispersed
Csa03g04077 Csa-Chr3:35706524 Csa06g03225 Csa-Chr6:27277593 2.90E-115 dispersed
Csa05g00943 Csa-Chr5:7821071 Csa06g03225 Csa-Chr6:27277593 1.29E-108 dispersed
Csa06g03225 Csa-Chr6:27277593 Csa07g02385 Csa-Chr7:21971899 3.59E-110 dispersed
Csa07g00313 Csa-Chr7:2338789 Csa06g03225 Csa-Chr6:27277593 5.85E-105 dispersed
Csa01g00488 Csa-Chr1:3175342 Csa06g03225 Csa-Chr6:27277593 1.51E-72 transposed
Csa01g00739 Csa-Chr1:4678750 Csa06g03225 Csa-Chr6:27277593 1.31E-70 transposed
Csa02g02036 Csa-Chr2:18764907 Csa06g03225 Csa-Chr6:27277593 9.21E-128 transposed
Csa05g01292 Csa-Chr5:13726487 Csa06g03225 Csa-Chr6:27277593 1.67E-72 transposed
Csa06g03152 Csa-Chr6:26881169 Csa06g03225 Csa-Chr6:27277593 2.13E-29 transposed
Csa07g01808 Csa-Chr7:18331491 Csa06g03225 Csa-Chr6:27277593 7.86E-85 transposed
Csa04g00519 Csa-Chr4:3406522 Csa06g03225 Csa-Chr6:27277593 3.02E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32159 PF00096 zf-C2H2 0.0051 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03225 K25869 - csv:101217597 921.383