Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03228 ATGAGACGTCTTTGTCCCAACATCGACCGAGACGACGGCCTCGAAACCATTCTCGAGGTCCCAATCCCTGAAGAAATGTTCACCAGTATGGGCAGCAACGTCACTCTCCGTTGGCAAAACATGTCCACTTGGATGAAAGCTCAAACCTCCGACAAATGGTCTTCTCCCATCATCGCTAATCGCTTCAACGAGCTTCGGTTTCTCCTCTACCTCGTCGGATCTCCTCTCATCCCTCTTCAAGTCCAGTTAGGGCACTCTGTTCATCGCCCCGTCAGAGATTGTTCCATTGAGGCTTCGACTGCGAAGTATATTGTGCAACAGTATATAGCCGCGACGGGAGGGCCGGCGGCGTTGAATTCGGTGCAGAGTATGTGTGTGACGGGGCAAGTTAAGATTAAGGCGTCGGATTTTCATTTGTCGGATGAGAGTATTGAGGTGAAGAAGAGTACGGAAGAGATCGGAGGGTTTGTGCTTTGGCAGAAGAATCCGGATCTATGGTGTTTGGAGCTTGTGGTTTCTGGTTGTAAGGTTATTTGTGGTTCTAATGGGAAGCTTTCATGGCGACATTCTTCTAATAATCAGCAATCTCCCATCTCCACTGGCCCTCCTAGACCTTTACGCCGATTCCTTCAGGGTTTAGACCCAAGAGCAACAGCCAACCTATTCATAGACGCAATGTGCATCGGCGAGAAGCTAATCAACGACGAAGACTGCTTCATTCTAAAGCTGGAAACAAGCCCCGCAATTCGTGAAGCACAGAGCGGCCCTAATTACGAGATAATCCACCACACAATTTGGGGTTATTTTAGCCAACGCTCCGGTCTTCTCATTCAATTCGAAGACTCTCGGCTCCTACGGATGCGAACCAAAAGCGACGAAGATGTCTTCTGGGAGACCAGCACCGAGTCCGTTATGGAAACCTACCGTTACGTTGACGGCGTTAACATAGCTCACAGTGGTAAGACCAACGTCACAGTTTTCAGATACGGCGAACATTCTGCTAATCACAAGAGGGAGATGGAGGAGACTTGGAAGATTGAAGAAGTTGATTTTAATATATGGGGTTTGACCATGGAGAGCTTTCTTCCACCTCCTGGCGCCGCCGTCTTGCAATTGCATGACGCTTCTTAA 1131 48.89 MRRLCPNIDRDDGLETILEVPIPEEMFTSMGSNVTLRWQNMSTWMKAQTSDKWSSPIIANRFNELRFLLYLVGSPLIPLQVQLGHSVHRPVRDCSIEASTAKYIVQQYIAATGGPAALNSVQSMCVTGQVKIKASDFHLSDESIEVKKSTEEIGGFVLWQKNPDLWCLELVVSGCKVICGSNGKLSWRHSSNNQQSPISTGPPRPLRRFLQGLDPRATANLFIDAMCIGEKLINDEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLRMRTKSDEDVFWETSTESVMETYRYVDGVNIAHSGKTNVTVFRYGEHSANHKREMEETWKIEEVDFNIWGLTMESFLPPPGAAVLQLHDAS* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27297793 27299816 + CsaV3_6G046140.1 Csa06g03228 534855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03228 376 Pfam Protein of unknown function (DUF620) 124 364 IPR006873 -
Csa06g03228 376 PANTHER LIPASE 1 363 IPR006873 -
Csa06g03228 376 PANTHER BNAC02G43970D PROTEIN 1 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03228 - - - csv:105435932 771.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00155 Csa-Chr6:1012669 Csa06g03228 Csa-Chr6:27297793 1.51E-136 dispersed
Csa06g03228 Csa-Chr6:27297793 Csa07g00458 Csa-Chr7:3313460 1.96E-41 dispersed
Csa03g04197 Csa-Chr3:36818412 Csa06g03228 Csa-Chr6:27297793 2.18E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g947 . . . . . . . . . . . Cma07g00496 . Car07g00436 Sed14g1106 Cpe19g00804 . Bhi03g01281 Tan03g1967 Cmetu08g1547 . Hepe04g1498 . . Cla01g01895 Cam01g1985 Cec04g1637 Cco04g1703 Clacu01g2005 Cmu01g1876 Cre04g1557 . . . . Lsi01g00688 . . Cme08g00836 . . . . Bpe10g00114 . . . . . Cmo07g00498 . . . . . . . . . . . . . . . . . . . . . Csa06g03228 Chy02g00660 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011737 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30