Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03232 ATGGGGGACTACAATGATGCCTTCATGCGGAACCAAAACGCCGCCGTTCAGGCTCGTACTAAGGCCCAGAATCGTGCCAATGTTCTTCAACTCAAACTGATTGGGCAGAGTCATCCTACTGGTCTAACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTCTGGAGTTCAAACCTCCACCAGAGAAAAGGAAATGTCCACCATTAACAGGGATGGCCCAGTTTGTGAGTAATTTTGCAGAACCTGATGATCCGGAATATGCTCCCCCTGTTCAAAAGGGTGAAACTCCAACAGAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAGGGTGCAGAGAAAGCTGCTGAGGAGCTGCCAAAATATCTTGAGCGTGATGATCCAAATGTTACTGGAGATCCATACAAAACACTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCCGAATCAAAAGAGAGTTTGAATCTTATGGGCCAATCAAGCGGGTCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCATATAAACAAGCTGATGGCAGGAAGATTGATGGTAGAAGAGTACTTGTGGATGTTGAGCGAGGTAGAACAGTACCAAATTGGCGCCCCCGCCGTCTGGGTGGAGGTCTGGGAACTACCAGAGTGGGAGGTGAAGAAAATAGCCAGAGGCATTCTGGAAGGGAACAACAGCAGTCTGGTGCACCATCCAGATCAGAGGAGCCTAGGGTTCGAGAAGATCGTCATGGAGAGCGAGATAGGGAAAAGTCTTATGACAAGGGAAGAGACCGAGAAAGAGATAGAGAGAAGTCTCGTGAACATTCCCATGAGAGATCTAAGGAGCGTGATGTCAGAGAGGACAGGCATCACAGAGACCGTGATAGGACTAGGGATAGAGATAGGGATAGGGATAGGGATAGAGAGAGAGATCGAGATCGTGGCTATGACCGTGATAGAACACGTGATCGAGGAAGGGATCGAGGTCGTGACTATGAGCGTGACAGAGATCGGGATCGTCATCGGGATAGAGATAGGGAGAGGGAGAGGGATCATGAAGGGGGATATCCAGACCCTGATCGTGGTCGCTCTCACGACAGGGACGACTATGATCGGGTTGAATCAAAATATGAGAAGGATAGACATGGTGATAGGGATAGGGATGTGGATCGTGCAGAAACTGAGGATGGTCGTGGGTGGTATGATCAGCCTGAGCATGGGCACAGAGATGCTGATCATGATCCCCAGTACTACGATCACTTTGAACATAACCGTGGTCGAGGACAATATGATCAACCAGAAGGCCATCGTGACCAAGATCGTTATGATCAGTATGATGATAGAATGGACGATGATTATCATTATGAGCGTGGAAATTCTGAATCACATGATAGAGAGAGGTCTCGTGATTTGAATCACGAATATAAGCGCAGTGAGAGATCTCATTCGAGAGAGTACTAA 1518 47.56 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHSGREQQQSGAPSRSEEPRVREDRHGERDREKSYDKGRDRERDREKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRDRERDRDRGYDRDRTRDRGRDRGRDYERDRDRDRHRDRDRERERDHEGGYPDPDRGRSHDRDDYDRVESKYEKDRHGDRDRDVDRAETEDGRGWYDQPEHGHRDADHDPQYYDHFEHNRGRGQYDQPEGHRDQDRYDQYDDRMDDDYHYERGNSESHDRERSRDLNHEYKRSERSHSREY* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27310659 27316030 + CsaV3_6G046180.1 Csa06g03232 534859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03232 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Csa06g03232 505 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Csa06g03232 505 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 357 - -
Csa06g03232 505 PANTHER - 1 357 - -
Csa06g03232 505 MobiDBLite consensus disorder prediction 220 505 - -
Csa06g03232 505 MobiDBLite consensus disorder prediction 259 505 - -
Csa06g03232 505 SUPERFAMILY RNA-binding domain, RBD 128 242 IPR035979 GO:0003676
Csa06g03232 505 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Csa06g03232 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Csa06g03232 505 SMART rrm1_1 139 212 IPR000504 GO:0003723
Csa06g03232 505 Gene3D - 126 250 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03232 K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa - csv:101218309 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03232 Csa-Chr6:27310659 Csa06g00415 Csa-Chr6:3611291 1.30E-14 dispersed
Csa07g00870 Csa-Chr7:6652225 Csa06g03232 Csa-Chr6:27310659 3.38E-08 dispersed
Csa06g03232 Csa-Chr6:27310659 Csa01g00294 Csa-Chr1:1841084 1.40E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g953 . . Bda04g00054 . . . Bma09g00075 . . . Cma03g00757 . Car03g00692 Car07g00434 Sed14g1110 Cpe19g00806 Cpe10g00604 Bhi03g01285 Tan03g1971 Cmetu08g0416 . Hepe04g1502 . . Cla01g01899 Cam01g1988 Cec04g1640 Cco04g1705 Clacu01g2007 Cmu01g1878 Cre04g1559 Cone8ag0804 . Cone6ag1615 . Lsi01g00682 . . Cme08g00840 Blo05g00793 . . . Bpe10g00116 . . . . Cmo03g00785 Cmo07g00496 . . . . . . . . . . . . . . . . . . . . . Csa06g03232 Chy02g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007233 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36