Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03233 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCTCAGCAAGTCATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCAGCACCCACAGCACCAGCCACAGCAGCTTACGGGACCCTGTACTTTCGGTCTCAACCCATGGAGCGCCTCGAATCATGCTTTATCTGGGGCTCCAGATTTGGGGTTTGGGCTTACTGGAGCTGGATTTCCTGATCCGTTTCAGGTTCAGAGAGTGGTCGACGGTGGAGAAACGAGCTTTCAGTTTCCGAATTTGGAGCACCATTCTCCTGCTTTTAGATTTTCTGATTTCGACGGCGGTGCTGCTGCAGAGTTCGACTCTGACGAGTGGATGGAGAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGATGTGACGCGTGGCAATCTAATTCGGATTTTGCTTTCTACGCTGCCGATCCCTTTGTACCCTGTCCAAGTCGCCTCCCTATCCCCTGTTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGACCCGCCCAAAAGTGAACCCGCCGTTGAACCGCCCGTGGTTTCGTGGACGGGGATTCCCCCGGCAACTCCATCGGCAGTGGTTAAGGACACTCAAATCCCCAATCCTCCCCTTGCTGTTCTCAAGAGTGAAGATAACGGCGGTTCTTCGAGCTCTGCAGACACTGAATCGACTCCGCCACTACTTAAAACCCTAATTGAATGTGCTCGAATTTCTGAATCGGAGCCAGATCGAGCGGCTCAAACGTTGATTAAGCTTAAGGAATCATCATCAGAGCATGGAGATCCGACCGAGAGGGTGGCCTTTTACTTTATGGATGCCCTTTGCCGGAGATTATCACTTCCATCGGATAGTCGTTTGATTTCTTGTGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGAAAACGCAAGCAAGATTCACATAATCGACTTCGGAATTGCTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGGTCCACCGGAAAACCAACCGGAATCCGGATCTCCGGCATTCCAGCTCCAATGCTTGGAAGCTGTCCAGCGACGGGGTTGTTCGCGACAGGTAACCGACTAGCCGAGTTCGCAAAGCTTCTGGAACTTAACTTCGAATTCGATCCAATTCTCACTCCAATCGAAGAACTGAACGAATCATCCTTCCAAATAGACACCCATGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAACCTCCTGGACGAAACTCCCCGCGCCGTTCTCAACGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCAAGCCTAAACCGGGTCGGTTTCTTAAACCGGTTCAAGAACGCACTCAGACATTACTCAGCCGTGTTCGAATCACTTGACCCAAAACTACCTCGCGACTCAAACGAACGGCTTCACTTAGAAAAGCTATTACTCGGCCGGCAAATCGGCGGACTGGTCGGACCGGAATCATCACCAGGATCGAAAACCGAACGAATGGAAGACAAAGAAGAATGGAAAAAGTTAATGGAAAATTCAGGATTTGAATCAGTAAATCTGAGCCATTACGCAAAAAGCCAAGCTAAAATCCTTTTATGGAAGTACGATTATAGCTCTGAGTACTCATTAATGGAATCCTCACCTGGGTTTCTCTCATTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1830 49.13 MANMCADSGNLMAIAQQVMKQKQQQEQQQQHPQHQPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLTGAGFPDPFQVQRVVDGGETSFQFPNLEHHSPAFRFSDFDGGAAAEFDSDEWMESLMAGGDSTDSSNLPSGCDAWQSNSDFAFYAADPFVPCPSRLPIPCSSPSDLNRVIFPDPPKSEPAVEPPVVSWTGIPPATPSAVVKDTQIPNPPLAVLKSEDNGGSSSSADTESTPPLLKTLIECARISESEPDRAAQTLIKLKESSSEHGDPTERVAFYFMDALCRRLSLPSDSRLISCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPTGIRISGIPAPMLGSCPATGLFATGNRLAEFAKLLELNFEFDPILTPIEELNESSFQIDTHETLAVNFMLQLYNLLDETPRAVLNVLQLAKSLNPKIVTLGEYEASLNRVGFLNRFKNALRHYSAVFESLDPKLPRDSNERLHLEKLLLGRQIGGLVGPESSPGSKTERMEDKEEWKKLMENSGFESVNLSHYAKSQAKILLWKYDYSSEYSLMESSPGFLSLAWNEVPIITVSSWR* 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27323359 27326845 + CsaV3_6G046190.1 Csa06g03233 534860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03233 609 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 241 608 IPR005202 -
Csa06g03233 609 Pfam GRAS domain family 241 609 IPR005202 -
Csa06g03233 609 MobiDBLite consensus disorder prediction 18 45 - -
Csa06g03233 609 MobiDBLite consensus disorder prediction 223 237 - -
Csa06g03233 609 MobiDBLite consensus disorder prediction 217 237 - -
Csa06g03233 609 ProSiteProfiles GRAS family profile. 231 609 IPR005202 -
Csa06g03233 609 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 241 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00507 Csa-Chr4:3311850 Csa06g03233 Csa-Chr6:27323359 0 dispersed
Csa06g03233 Csa-Chr6:27323359 Csa02g02578 Csa-Chr2:22508174 1.95E-58 dispersed
Csa06g03233 Csa-Chr6:27323359 Csa06g00941 Csa-Chr6:7561913 9.78E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32160 PF03514 GRAS 3.90E-109 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03233 - - csv:101218550 1197.19