Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03236 ATGTTTCTTCTTAAAAGAAGGGGCTCCCATAACAATGGAGAAACTGATGATCCTTCACTGCAGGATGGAAAGATCATTGAACTAAAAGGTGCCATGGGGAACCTATCCGGTCGCAGTATAAAGTACTGTAATGATGCATGCCTTCGGAGATATTTGGCTGCTCGGAATTGGGATCTTAACAAGGCAAAGAAAATGCTGGAGGACTCACTCAAATGGAGGGCAACTTACAAGCCCGAGGAAATCAGATGGAATGAAGTAGCACATGAAGGTGAAACAGGCAAATCTTTTAGAGCAAATTTCTACGACCGTTTCGGTCGAACAGTGCTCATATCCAGGCCAGGGATGCAGAATACGAACTCGCCGGAAGACAATGTTCGACATGTGGTGTATCTTTTAGAGAACACCATTTTGAACCTTCGTAACGGCCAAGAACAGATAGCGTGGCTGATAGATTTTACTGGATTTACACTAAACACCAACATCTCTGTCAAAGCAGCAAGAGGCATTATTAACATACTGCAGAGCCACTATCCAGAAAGGCTTGCTGTTTCATTTCTCTACAATCCTCCAAGAATCTTTCAAGCCTTTTGGAAGGCTATCAGGTACTTTATTGATCCAAATACAGGTCAGAAAGTAAACTTTATATACCCCAACAACAAGGACAGTGTAGAGCTGATGAAATCTTTCTTCGATATGGAAAACCTTCCAAGTGTATTTGGAGGAAAAGCCACTCTAACATATGACCATGAAGAGTTCTCAAAAATGATGGCAATGGACGACATTAAAACTGCCAAATTTTGGGAGGTAAACGATAAGCCTTCCCATAATATGAATGGGCATTCAGGCCTTGAGGTCGCACAAGAAGAGGCAATACCCATCTCCGTTTCATCAGCTTAG 897 42.36 MFLLKRRGSHNNGETDDPSLQDGKIIELKGAMGNLSGRSIKYCNDACLRRYLAARNWDLNKAKKMLEDSLKWRATYKPEEIRWNEVAHEGETGKSFRANFYDRFGRTVLISRPGMQNTNSPEDNVRHVVYLLENTILNLRNGQEQIAWLIDFTGFTLNTNISVKAARGIINILQSHYPERLAVSFLYNPPRIFQAFWKAIRYFIDPNTGQKVNFIYPNNKDSVELMKSFFDMENLPSVFGGKATLTYDHEEFSKMMAMDDIKTAKFWEVNDKPSHNMNGHSGLEVAQEEAIPISVSSA* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27338012 27341438 + CsaV3_6G046220.1 Csa06g03236 534863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03236 298 SUPERFAMILY CRAL/TRIO N-terminal domain 16 85 IPR036273 -
Csa06g03236 298 SMART CRAL_TRIO_N_2 44 69 IPR011074 -
Csa06g03236 298 SUPERFAMILY CRAL/TRIO domain 83 260 IPR036865 -
Csa06g03236 298 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g03236 298 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 10 290 - -
Csa06g03236 298 Gene3D - 13 288 IPR036865 -
Csa06g03236 298 Pfam CRAL/TRIO, N-terminal domain 44 68 IPR011074 -
Csa06g03236 298 PANTHER GH16843P 10 290 - -
Csa06g03236 298 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 101 247 IPR001251 -
Csa06g03236 298 CDD SEC14 102 242 IPR001251 -
Csa06g03236 298 Pfam CRAL/TRIO domain 101 241 IPR001251 -
Csa06g03236 298 SMART sec14_4 89 244 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03236 - - - csv:101219012 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02141 Csa-Chr4:22223929 Csa06g03236 Csa-Chr6:27338012 6.29E-78 dispersed
Csa05g01115 Csa-Chr5:11388382 Csa06g03236 Csa-Chr6:27338012 5.02E-14 dispersed
Csa05g01116 Csa-Chr5:11402231 Csa06g03236 Csa-Chr6:27338012 9.02E-18 dispersed
Csa06g03236 Csa-Chr6:27338012 Csa02g01280 Csa-Chr2:12453089 4.07E-13 dispersed
Csa01g00134 Csa-Chr1:800033 Csa06g03236 Csa-Chr6:27338012 5.46E-13 transposed
Csa03g00276 Csa-Chr3:2245255 Csa06g03236 Csa-Chr6:27338012 1.63E-13 transposed
Csa04g00504 Csa-Chr4:3290804 Csa06g03236 Csa-Chr6:27338012 4.08E-142 transposed
Csa06g01504 Csa-Chr6:12693631 Csa06g03236 Csa-Chr6:27338012 3.88E-08 transposed
Csa03g04202 Csa-Chr3:36860229 Csa06g03236 Csa-Chr6:27338012 1.37E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82