Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03243 ATGGAGACGAGAAGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATGCTGATAATCCGTTTCTCTCAGCTGCTGATAGAAGAAGAGATCACACGGTACCCCAACTTCACTTCTCTACTCATCAGAAATTGACTCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCAGATCCTCCAATCCAGCCCTCCATTTCTGCCTCTCCGCCGTCATCTGCTGCTACTCCGACTCCGCTGCCAATTGCCGGCACCAGCAGCAGATTGATCTCAAGAACGCCATCATTTGCAGGTGCAACAGACAACAATATACCTTCATCGGTTATTCGATACCGAGAATGTTTGAAAAACCACGCAGCAAGTACTGGTGGCCATGTTCTTGATGGCTGCGGGGAGTTCATGCCAAATGGGGAAAATGGAACATTTGAGGCAATGAAGTGTGCAGCTTGTGAATGCCATCGGAACTTTCACAGGAAAGAAATGAAAGATGATCCACCCTTCCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCATCGCACTGAAAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTACCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGATGAGTCTTCCAGTGAGGATCTAAACATGTATCACCCGTCTAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAATAAAGAAACGTTTTAGGACAAAGTTCACTCAAGGACAGAAGGACAAGATGGAAGAATTTGCTGAAAAATTGGGGTGGAAAATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTTTGCGCTGAGGTGGGAGTAAGGAGACAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1014 45.27 METRSEDEEIGTPNSPLCYNNPSSNRESSTKLPNADNPFLSAADRRRDHTVPQLHFSTHQKLTLHHIHKQHTRDHPEATPDPPIQPSISASPPSSAATPTPLPIAGTSSRLISRTPSFAGATDNNIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGENGTFEAMKCAACECHRNFHRKEMKDDPPFQQALPSGFFISNSIRNNGHRTERTPVVPVSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLIKKRFRTKFTQGQKDKMEEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27375407 27379138 + CsaV3_6G046290.1 Csa06g03243 534870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03243 337 MobiDBLite consensus disorder prediction 1 40 - -
Csa06g03243 337 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 132 183 IPR006456 -
Csa06g03243 337 SUPERFAMILY Homeodomain-like 272 334 IPR009057 -
Csa06g03243 337 MobiDBLite consensus disorder prediction 14 36 - -
Csa06g03243 337 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 273 330 IPR006455 -
Csa06g03243 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 133 182 IPR006456 -
Csa06g03243 337 Gene3D - 262 334 - -
Csa06g03243 337 MobiDBLite consensus disorder prediction 58 108 - -
Csa06g03243 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 60 335 - -
Csa06g03243 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 335 - -
Csa06g03243 337 MobiDBLite consensus disorder prediction 90 108 - -
Csa06g03243 337 Pfam ZF-HD protein dimerisation region 131 183 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03243 - - - csv:101220687 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02058 Csa-Chr2:18872023 Csa06g03243 Csa-Chr6:27375407 1.37E-67 dispersed
Csa02g02187 Csa-Chr2:19666125 Csa06g03243 Csa-Chr6:27375407 3.09E-53 dispersed
Csa04g00560 Csa-Chr4:3724756 Csa06g03243 Csa-Chr6:27375407 1.21E-58 dispersed
Csa05g01927 Csa-Chr5:22469732 Csa06g03243 Csa-Chr6:27375407 1.18E-53 dispersed
Csa05g02448 Csa-Chr5:26404212 Csa06g03243 Csa-Chr6:27375407 2.55E-43 dispersed
Csa05g02983 Csa-Chr5:30174070 Csa06g03243 Csa-Chr6:27375407 3.00E-45 dispersed
Csa06g03243 Csa-Chr6:27375407 Csa06g03128 Csa-Chr6:26710896 8.91E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32162 PF04770 ZF-HD_dimer 2.70E-29 No_clan Csa TF