Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03246 ATGTCATTCAAAAGCTTTTTTCGCGAGCTAAGGGAAATGAAAAATGGGATTAGAATCAGACCGAAGCGAGGGGGAGAAGGGAGGAATTGGCGAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCTCAACCTGAAGTTATACAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTTCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGAAAAATTACACTGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCGCTTAAACAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTGTATCTTTGGTAGCTGATGATTTTTCTAGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCTCAAGATTCATCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAGCAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGCAACTACTCTATAGGGTCAATCTCTTATGAGCTTAATATTCTACGAACTAGAGGACCACGAAGAATGCGTTGTGTAATGCAGTCAATCCCTGCATCATGCATTCAACAGGGAGGAAATGCACCAACACCAACCTCATTCTCGTCCTGCCTCAACGACCATCACCACCACCTACCTTTACCGACTTCTAATGGAAAGGAGTCAGACATAGATTTCAGTTCCACAAGTATCACTGAGACACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAGCTCCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAAAATTTCCAACTCGTGGCCGATGTCGATCCAGCCCTCGATGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGAAAAATCGGAAAGGACATCTTCACAATGGATTATCGCTATCCGCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1245 44.34 MSFKSFFRELREMKNGIRIRPKRGGEGRNWRSRTRSHIAPDEVPPQPEVIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRKITLEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRIRRATGTDFVVSLVADDFSRACSTYVGKLRSNFFGSRFIMYDSQPPVLTAGQQSNQSNRRFHAKQVSPTMSACNYSIGSISYELNILRTRGPRRMRCVMQSIPASCIQQGGNAPTPTSFSSCLNDHHHHLPLPTSNGKESDIDFSSTSITETPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27387767 27391500 - CsaV3_6G046320.1 Csa06g03246 534873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03246 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Csa06g03246 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Csa06g03246 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Csa06g03246 414 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Csa06g03246 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Csa06g03246 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Csa06g03246 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Csa06g03246 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Csa06g03246 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Csa06g03246 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Csa06g03246 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Csa06g03246 414 Pfam F-box domain 55 101 IPR001810 GO:0005515
Csa06g03246 414 Gene3D - 49 102 - -
Csa06g03246 414 PANTHER TUBBY-RELATED 1 414 - -
Csa06g03246 414 Pfam Tub family 116 409 IPR000007 -
Csa06g03246 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Csa06g03246 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00572 Csa-Chr6:4906059 Csa06g03246 Csa-Chr6:27387767 2.35E-147 dispersed
Csa06g03246 Csa-Chr6:27387767 Csa07g02085 Csa-Chr7:20108075 2.02E-14 dispersed
Csa03g04225 Csa-Chr3:36997702 Csa06g03246 Csa-Chr6:27387767 1.10E-179 wgd
Csa04g00567 Csa-Chr4:3753112 Csa06g03246 Csa-Chr6:27387767 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32163 PF01167 Tub 6.00E-102 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03246 K19600 - csv:101221704 845.499