Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03246 | ATGTCATTCAAAAGCTTTTTTCGCGAGCTAAGGGAAATGAAAAATGGGATTAGAATCAGACCGAAGCGAGGGGGAGAAGGGAGGAATTGGCGAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCTCAACCTGAAGTTATACAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTTCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGAAAAATTACACTGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCGCTTAAACAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTGTATCTTTGGTAGCTGATGATTTTTCTAGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCTCAAGATTCATCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAGCAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGCAACTACTCTATAGGGTCAATCTCTTATGAGCTTAATATTCTACGAACTAGAGGACCACGAAGAATGCGTTGTGTAATGCAGTCAATCCCTGCATCATGCATTCAACAGGGAGGAAATGCACCAACACCAACCTCATTCTCGTCCTGCCTCAACGACCATCACCACCACCTACCTTTACCGACTTCTAATGGAAAGGAGTCAGACATAGATTTCAGTTCCACAAGTATCACTGAGACACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAGCTCCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAAAATTTCCAACTCGTGGCCGATGTCGATCCAGCCCTCGATGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGAAAAATCGGAAAGGACATCTTCACAATGGATTATCGCTATCCGCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG | 1245 | 44.34 | MSFKSFFRELREMKNGIRIRPKRGGEGRNWRSRTRSHIAPDEVPPQPEVIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRKITLEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRIRRATGTDFVVSLVADDFSRACSTYVGKLRSNFFGSRFIMYDSQPPVLTAGQQSNQSNRRFHAKQVSPTMSACNYSIGSISYELNILRTRGPRRMRCVMQSIPASCIQQGGNAPTPTSFSSCLNDHHHHLPLPTSNGKESDIDFSSTSITETPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27387767 | 27391500 | - | CsaV3_6G046320.1 | Csa06g03246 | 534873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03246 | 414 | ProSitePatterns | Tub family signature 1. | 342 | 355 | IPR018066 | - | |
Csa06g03246 | 414 | Gene3D | Tubby Protein; Chain A | 113 | 414 | IPR025659 | - | |
Csa06g03246 | 414 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 414 | IPR025659 | - | |
Csa06g03246 | 414 | SUPERFAMILY | F-box domain | 49 | 98 | IPR036047 | GO:0005515 | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 324 | 341 | IPR000007 | - | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 342 | 358 | IPR000007 | - | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 371 | 390 | IPR000007 | - | |
Csa06g03246 | 414 | PRINTS | Tubby superfamily signature | 392 | 414 | IPR000007 | - | |
Csa06g03246 | 414 | Pfam | F-box domain | 55 | 101 | IPR001810 | GO:0005515 | |
Csa06g03246 | 414 | Gene3D | - | 49 | 102 | - | - | |
Csa06g03246 | 414 | PANTHER | TUBBY-RELATED | 1 | 414 | - | - | |
Csa06g03246 | 414 | Pfam | Tub family | 116 | 409 | IPR000007 | - | |
Csa06g03246 | 414 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 414 | - | - | |
Csa06g03246 | 414 | ProSitePatterns | Tub family signature 2. | 399 | 414 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g00572 | Csa-Chr6:4906059 | Csa06g03246 | Csa-Chr6:27387767 | 2.35E-147 | dispersed | |
Csa06g03246 | Csa-Chr6:27387767 | Csa07g02085 | Csa-Chr7:20108075 | 2.02E-14 | dispersed | |
Csa03g04225 | Csa-Chr3:36997702 | Csa06g03246 | Csa-Chr6:27387767 | 1.10E-179 | wgd | |
Csa04g00567 | Csa-Chr4:3753112 | Csa06g03246 | Csa-Chr6:27387767 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32163 | PF01167 | Tub | 6.00E-102 | CL0395 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03246 | K19600 | - | csv:101221704 | 845.499 |