Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03248 ATGAACGACTTGATGACGAAATCGTTCTTAAGTTATGTAGAACTGAAGAAACAGGCGCAGAGGGAAGCTGTAGGCGGTGGCGGCCACGGCTTCGACATTGAATCCGGTGGCCAAAAACTGAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAAAAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAGAAACTAAATCAAGAAGCCAAATCAACCCACAACGCCAAAATCCTCCGTGGATTAAGAGACAGAATCGACTCCGATATGGTTTCAACCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCATCGTGGACAGGACAAGAACTTCAATCACGAACGGATTGAGAGTGAAATTGAGAGAAATGATGAACGAGTTTCAGGGGTTGAGAGAAAAAGTTGTGGCGGATCATAAGGAAGATCTGAGAAGAAGGTATTTTAGTGCAACTGGGGAACAACCCAGTGAAGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAATGTTAGGAGGGAAATTGAGTGAGACCGAGTCAGAGGATCGAGTGAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAAAAAATCGAGGATATTGAAGAGAATGTGGCGAAAGCTGGGCAGTTCATCAATGGTGGAACTCGAAGCCTTTATTATGCGAAGCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 918 44.23 MNDLMTKSFLSYVELKKQAQREAVGGGGHGFDIESGGQKLNPTEEQNLSLFFEKVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSTLRRARILKEKLASLDQSNTANRLISVAYGEGTIVDRTRTSITNGLRVKLREMMNEFQGLREKVVADHKEDLRRRYFSATGEQPSEEQVEKIMSGSLKLEMLGGKLSETESEDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKIEDIEENVAKAGQFINGGTRSLYYAKQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27399246 27400604 - CsaV3_6G046340.1 Csa06g03248 534875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03248 305 Coils Coil 55 75 - -
Csa06g03248 305 Gene3D - 206 304 - -
Csa06g03248 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Csa06g03248 305 PANTHER SYNTAXIN-112 4 301 - -
Csa06g03248 305 CDD SNARE_syntaxin1-like 217 270 - -
Csa06g03248 305 Gene3D - 43 176 - -
Csa06g03248 305 PANTHER SYNTAXIN 4 301 IPR045242 -
Csa06g03248 305 SMART SynN_4 43 170 IPR006011 GO:0016020
Csa06g03248 305 CDD SynN 51 198 IPR006011 GO:0016020
Csa06g03248 305 SMART tSNARE_6 206 273 IPR000727 -
Csa06g03248 305 Pfam Syntaxin 51 246 IPR006011 GO:0016020
Csa06g03248 305 SUPERFAMILY t-snare proteins 47 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01137 Csa-Chr4:9688071 Csa06g03248 Csa-Chr6:27399246 3.39E-78 dispersed
Csa06g02728 Csa-Chr6:23853120 Csa06g03248 Csa-Chr6:27399246 2.75E-54 dispersed
Csa06g02729 Csa-Chr6:23857036 Csa06g03248 Csa-Chr6:27399246 4.17E-56 dispersed
Csa06g03248 Csa-Chr6:27399246 Csa03g03501 Csa-Chr3:31360235 5.31E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03248 K08486 - csv:101217836 587.8