Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03254 ATGAGTCCGGCTTTGAACTTAATGAAGCAGAGGAAGGATGGTTATGAGCCGTCTGATACTGAGACAGAATGGCAAGAAAGCCCCTGGAATGATCCTAAGGAGAAGAAACTTGTACTAGATTACAATAATCGAAGAACTGATTCGGCGGTACCCAAGAAGTTCAGTATGGCGGCGAATGTTTCTCCTCCTGGTTTGCGGAGAAACGGTGGCAAAACGCCTCGCCGTCCAGCCAAAGACGATAGTGTTCTTGTTATGCTTCAGAGAAACATCAGCCCATTGTCAAGAGCAGAAAGAAGAAGACACGAGTCTCCTTTTAAAGCTTCGGGGGAGGAAATTGGAAGTTCTAGCATGAGGTCAAGAAAAGAGGAGAAGTTCACTTATTCTCATGGGAGTAACAAAACAAGTCAAAAACCAAGTTACAGTAGAAGATCGGTGACTGCTCCGAGGTTGAGGATGAAAGATGAACATATGATTGCTGCTAATGATTTATCTCAAAGGAGAGAGAGAGCAGCTCCAACCTTGAAGGTCAGCTCCATCCTGCAGCAACCAAAGGAGGTTTCCCACGCGAAGTCTCCATCTATTGGTGAAATGAATGAGTTGATTGCAGATGGAAGGATTAATAGAGGTTTGGCTTTAAATGACCCTGTGGTTGAAAGCACGGGGTCCATCTCGCCGGGGGATATATTCTTTTCTCGTGATGGTTTGCCTGTTGGGATGAATAACAACGTCACAGCAAAGAGAAATGCATTCAAGAACTATATAAGCCCAAAGCCTACATTTGTGACTAAAAAGAACGATGATACTTATAATCAAGTGGAAGTAAATGCTAATGGTAGAGGGGTTTCTTCTACTGGAGGAGGTTTGTCAACGACCACAAACAGTAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCTTGGAAAATAGTAAGATCAGTGATGTGAGTGGAAGAACAAGTGAAAGTACTAGAAGGTTTATAGCCAACAGACGAAAGAAGAAGAATGATATATGGTTTTCTTGTATGAGGAATGGGACTTGCAGGACGACAAAATCGCCTGAAAAGCGACCATTCGATGAAGCTACATATATTGAAAAGGCAAATGTTGTTGAATATTTGAAACCCTTCTGGGCGGATCAGCATCGACCGGTTTCCTTAAATGGGTTCACTTTCCATAAGCATGAGGCCCAACTTCTCAAGCAATTAGTTTCACAGGACAGTTTCCCCCACATTCTGTTCAAAGGTCCACGAGGATCTGGTAAAAGAGTACTGATGATGGCTCTTCTGCGTGAGATATATGGTGATTCATGTTGGAATGTTTCTCATGATTTGCGACGATTTCAGATTCAGGAAAGAAAATTGACCCAAGTCTTCGTTCCATTGACATCAAGTGCTCACCATGTGGAGCTAAATTTAAGCTCGGAATCAAATGCTAAGTATGCTTTGCTGGGATTGGCTAAAGAAATAGGCAGTGAATATTCTATTAATGTGGAAGCAAGAAATGTCAATCCAAAGGCAATTTTCAAAGTGGTAGTCCTTTTAGATGTAGACAAAGCCACAGAGGATATTCAGCACTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCTTGCAAAGTGGTACTCTGTTGTGAAGACGACTCGGGCATCCTTGAATCGGTGATAAGCCGCTGCAAAGTTATCAAAATTAACCCTCCTGTAACTCATGAAATCATGGATGTACTCATCAAAATAGCAGAGAAGGAGGAATTTGACTTACCAATGAACTTTGCTTCTAAGATTGCTACTAAAGCAAAGCAAAACCTGAGAAAAGCAATCATGGCGCTAGAAGCATGCAAGGCACACAATTATCCATTTTCTGATGACCAGCCAATCCCTATTGGATGGGAAGATGCCTTGGTTGAACTTGCGTCCCATATCCTCGAAGACCCATCGAATCCAAGATTACATCAAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCAGTTCATCCTAAACTAATTCTCCAGAAGCTTGTAGAACAATTTCTGAAAAGAATTGAGATGAGATCAAGAAGGGAACTTTATTATTGGCATGCTTACTATAACAAGAGACTCCCAATTGAAACTGGAGTAGGTGCTTTACCCAAATTGGAAGAATTTGTGGCAAAGTTCATGAGCATGTACAGGAAAAGCTCCAACAATTTCGTCTATGATTGA 2205 41.45 MSPALNLMKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVPKKFSMAANVSPPGLRRNGGKTPRRPAKDDSVLVMLQRNISPLSRAERRRHESPFKASGEEIGSSSMRSRKEEKFTYSHGSNKTSQKPSYSRRSVTAPRLRMKDEHMIAANDLSQRRERAAPTLKVSSILQQPKEVSHAKSPSIGEMNELIADGRINRGLALNDPVVESTGSISPGDIFFSRDGLPVGMNNNVTAKRNAFKNYISPKPTFVTKKNDDTYNQVEVNANGRGVSSTGGGLSTTTNSSAAVSRENSSRISLENSKISDVSGRTSESTRRFIANRRKKKNDIWFSCMRNGTCRTTKSPEKRPFDEATYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPRGSGKRVLMMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSESNAKYALLGLAKEIGSEYSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCCEDDSGILESVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEACKAHNYPFSDDQPIPIGWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDSVHPKLILQKLVEQFLKRIEMRSRRELYYWHAYYNKRLPIETGVGALPKLEEFVAKFMSMYRKSSNNFVYD* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27413046 27416362 + CsaV3_6G046400.1 Csa06g03254 534881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03254 734 MobiDBLite consensus disorder prediction 129 143 - -
Csa06g03254 734 MobiDBLite consensus disorder prediction 93 107 - -
Csa06g03254 734 Gene3D - 376 567 IPR027417 -
Csa06g03254 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 614 IPR027417 -
Csa06g03254 734 MobiDBLite consensus disorder prediction 91 146 - -
Csa06g03254 734 CDD AAA 395 433 - -
Csa06g03254 734 MobiDBLite consensus disorder prediction 276 303 - -
Csa06g03254 734 Gene3D - 629 724 - -
Csa06g03254 734 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 184 730 - -
Csa06g03254 734 SUPERFAMILY post-AAA+ oligomerization domain-like 629 724 IPR008921 GO:0003677|GO:0006260
Csa06g03254 734 PANTHER OS02G0704966 PROTEIN 184 730 - -
Csa06g03254 734 MobiDBLite consensus disorder prediction 1 31 - -
Csa06g03254 734 Gene3D - 569 626 - -
Csa06g03254 734 MobiDBLite consensus disorder prediction 48 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03254 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101218071 1446.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01008 Csa-Chr3:8135896 Csa06g03254 Csa-Chr6:27413046 2.62E-37 dispersed
Csa04g02134 Csa-Chr4:22088303 Csa06g03254 Csa-Chr6:27413046 1.57E-77 dispersed
Csa06g02139 Csa-Chr6:19120488 Csa06g03254 Csa-Chr6:27413046 6.99E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38