Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03255 ATGGAAAACAGTGCTGGAGGAGGAAGTTCTGCAAATATGGGGTTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCTTGTCTCGAAGATCTGTCGCTGCTCACCCTTGGCACGATTTGGAGATTGGACCCGGTGCACCGTCGGTTTTCAATTGTGTTGTAGAAATTGGCAAAGGCAGCAAGGTTAAATATGAGCTTGACAAGGCCAGCGGCCTTATAAAAGTCGACCGTGTACTTTACTCATCAGTTGTTTATCCACACAATTACGGTTTCATCCCACGTACAATTTGTGAAGATAGTGATCCTATGGATGTTTTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGACCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCATTATACAGACATCAAGGAGATTCCCCCACACCGTCTGGCTGAAATTCGCCGATTCTTCGAAGACTACAAGAAGAACGAAAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCAGAAGCTGCCATTGATGCCATTAAGTACTCCATGGACTTGTATGCTGCCTACATTGTTGAAAGCTTGAGGCAGTAA 645 45.43 MENSAGGGSSANMGFPRIRLNERILSSLSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIDAIKYSMDLYAAYIVESLRQ* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27418036 27420945 + CsaV3_6G046410.1 Csa06g03255 534882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03255 214 CDD pyrophosphatase 50 202 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Csa06g03255 214 Pfam Inorganic pyrophosphatase 53 204 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Csa06g03255 214 Hamap Inorganic pyrophosphatase [ppa]. 49 205 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Csa06g03255 214 PANTHER BNAC07G03580D PROTEIN 16 208 - -
Csa06g03255 214 ProSitePatterns Inorganic pyrophosphatase signature. 100 106 - -
Csa06g03255 214 Gene3D Inorganic pyrophosphatase 32 210 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Csa06g03255 214 PANTHER INORGANIC PYROPHOSPHATASE 16 208 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Csa06g03255 214 SUPERFAMILY Inorganic pyrophosphatase 30 209 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03255 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - csv:101222890 425.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00840 Csa-Chr6:6741652 Csa06g03255 Csa-Chr6:27418036 5.82E-127 dispersed
Csa06g03255 Csa-Chr6:27418036 Csa07g00626 Csa-Chr7:4535877 4.21E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126