Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03256 ATGGATAATCTCTCACATTCTCGTCTCCCCAACAGGGGTTCTACCTCGCTTTCTAAGAAAATCTGTAATGGTAGTAATGGTGGTGGTCCTTTTGTTGCTCAAACTATCTACGACGACGTTTATGGCGGTCCTCCTAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTTGAAGACTACGGTGAGATTTTCGGCAGCTTTCACGCGCTACGTGCTTCCTCGATTCCCATTCTTGATCTTCCGGCTGTTAATGAATCTGAGGTTTTCTTTGACGCTCGGAGCTCTGCATTCGACTATGCGGAGGTTTTTGGCGGGTTTGATGGTCTGGATTTTGCGATTTCTTATGATGAATTGGTTGGACCTTCTAAAGACATTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAAACAGTCGTTTGAAGAAAGCACTGAGTTTTGCATATCATATAACAAGGTTGACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATTCACGTTACCCAGTTGGAGATGCTTCCAGGATTCTCATATCTGGTTGATGAAGCAAATCCCTCATCAAAGGCAACAGATGATGATCCGTCACTGCAGACCAACGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGGACACCATGCCATCCCTAGTGGACAGTAATGGCCCGGGACCATTATTTGAGGATAACCCTATTTCTCAAAATGGATATGGTAGAGGTGTTTGTCGTTCTCACGAGGATTTCATAACTGTATCTGAAATAAGCCTTAGAACTGAACCGTCGCAAGTGCCACCACCTGCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGAGGGACTACGCTAGAAGGACTTTGAGTTGTGGGGAAGCTGCTTCTGAATTAATTTCGGATGATCATACTCTTCCTTTATTTGATGTAGAGGTAGATGCCAGCTCATCTGCAGCGGCCTCTGCTGCAGCTATGAAAGAAGCAATGGAAAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGAAGAGAAAGAAGGAAGGGGTCCATGGAAGATTGAGACTGGACTTGAAAAATGATATCAGAGAAAAGGATGGGAAATTGTCGAAGATTCCAAACAGATTTAGGACTTTGGCCAACGAAAGTGAGCTGGGTGCTGGGGAAATTCATGGCCATGAGATGAATTTGTCTGCCAGAGAGGAGAGGCAAAAGGATGGGAGAGCAACTGAAGTTTGTTCAACACACTATGGAGGAGAGGAACTTTTAACAGAGGCTGAAAAGACCCTACCAATTAGAAGTGGGAGTAGATTTTTTGTGTCGGAGAACCATGATTGCTGCAACAAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCCAGTAAGGAATTTGAGTCGGTGAACAATAATGCAATTTCTAGCTTTGTGACTGCACAAATGGGTGTAGAGATCAACAATGCATGGGAGAATGATAAAGATCAAAACAAGAAAGTAAACGCAGTCCATACAACTCACGTTCTTAATGAGGCAGCGAAGAATTTAGAGAATATGGTTCATGGAAAGGAGGAAGATAAGATAAAACTGAAGCCAAATAAAAACGAAACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCAACAAGGTTTTTATGATCTTGAAGCAAATGATATGAAATTTGGAGTTGCTCAAGGGTTTATGGAAATAAAAAAGCAAATGGGTTGTGCTAATGATCTGGAGAAACGTGAAAAGCCTATGGAATTTAGACAATTGGCCAGTGAGCTAAAGGTTGAGCAACCACTTGTTTCACCAAGGGATATTGAACAAGAAAAGAAAAAAGTTGTTGAAAGAAAGAAAAATGGATATAGTCTGAAGGAATCTCATATAACAGAAAACAATGCAAATAAAATGGAAGCCACTGAGAATGAGAAAAGAGCGATGTTCCCAGAGGCTTCTGAAAGGGAAAAAGTTGAGCAAAAAATAAGGATGTTCCTCGAGCGACCAGAAGATAAGAAAAGACCGAATTTGGTTCTTGAGGATGACAACTTTATGGGACAGATGGCTCGTGAAAGACAACTGGAAGGAGTTTGTGACATGGAAGATCATGGGGAAAAGGAAAAAGAGGCTGCCAAAGTTGGAGTAAGTGAGAGACCTGAGTTAGCTCATGAGATAGAAGATGACAATAAATGGGCACAGGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTTGATGATTCATTTCAGCATTTGAACATTGGAGAGATACCAAGAGATGTTGGTCGGTGTAAAGTGACTTCGATGCTGGTTGAAGATTCACAAAATAGTACAGATCTCAACGGTACAAGTTCGGAGCATGATGGATTAAAGAGATTGGACGACAGACACAAAGTAAATTCAACAATAGAATCTCAAGTGCATGATTTGGGGATATCTGCTGCTGCACTTCAAATAAAAGATGACAAAGACCACTTACCCATTGAATTAGCATGTCCAAGAGGAATGTCCGAAGAATTCTCTATTGTAGATGAAAGTGGAGAGCGAAAGACTACAGTTATAGTTAATGAAAATCTGGAATTTAACAAAAATTCTTGTGTGCCGGGTGTGTGCGAGCCAGAGGTAGAACATAATGTTCCAGTTGAAATGGAAGATGCAGATATACAAATTTCTTTCGATGAATTGATTAAAAGAGCAGCCAAAGAAACACAATTTCAATCCGAAATTGAGCATACAAAATTAGAACCAACTAACTCGGAAGACGGACTTTCATCTGAAAACTCAACAAGCATGGACGAGGGAGAGAACATAGACGAGCTGGAAGATACGAAAGCATCTCTTCCTCTGGATAGAAGTGATGAGAAGGCAGGCCAGGCAGGTGGTTGCATTGAAGGGTCCGTAGGGAGAAAGAAGGTTGTTACCGGAATGGGCTCTTTTCCTGAACATCCAGAAAGTAACTTGTCCTGTTGTATGGAAGATAAAGGGAAGTCCTCTGACCAGGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGGTCAATGTAAGGGCTGAGAAAGGAAGTGGATTGAAGTCAACGTGGGAAAATATTTCAGAAAGGACATGGAAGAGTGGGGAATTCTCCTGTGAGGTCAATGCAAATCATGCCCCTGAAAGAAAGGAAAATATTGTAAACCAGAGCCATACATCTAAAGGAAAAGAGAGTGAGAGAGCAAGGAGTGAAGCAGAATCTGAGAATGACATTCTTCGAAAATTGGAAGAAGAGAGGGAAAGGGAGAGAGAGAGAGAGAAGGATAGAATGCCTATTGACAGGATTTCTCTTGAACCACGAGATAGAGTAGGTGCTGAAGCTCGTGAAAGGGTAGAAAGGGCTGCTCTGGAGAGGATGACTGCCGAAGCCCGACAAAGAGCATTGGCTGACGCACGTGAAAGATTGGAAAAGGCATGTGCAGAGGCAAGAGAAAATTCATTGGCTGGGAAGGCAGCAACTACGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCAGAGAAAGCCAAGTCTGACAAGACTTCTTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAACGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCTAGCCTACAATCTCAGAGCTTTGGCTCTGCCACTGTTTCAAGATATGCCTACTACTCGGCTTATGATGAGCGGAATGAGGGTGTTGATGGTGAATCACCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCGGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGGAACTTGCGTGCGTTGCTTTCTACATTGCAATATATCCTTGGACCTGATAGCGGTTGGCAGCCAATCCCCTTAACGGAAGTTATAACTGCCGTTGCTGTAAAGAAAGCTTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTGCAACAACGTGGTGCAAGTATTCAGCAAAAGTATATATGCGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCAGAAGAGCGTTAG 4302 42.56 MDNLSHSRLPNRGSTSLSKKICNGSNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVNESEVFFDARSSAFDYAEVFGGFDGLDFAISYDELVGPSKDIDDGSSDEAWTPAGTESLSDCSDHSGNSHCMSNGDSKQSFEESTEFCISYNKVDRESNGNISNGKIHVTQLEMLPGFSYLVDEANPSSKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRDTMPSLVDSNGPGPLFEDNPISQNGYGRGVCRSHEDFITVSEISLRTEPSQVPPPARPPPKFATKKRDYARRTLSCGEAASELISDDHTLPLFDVEVDASSSAAASAAAMKEAMEKAQAQLQNAKDLWKRKKEGVHGRLRLDLKNDIREKDGKLSKIPNRFRTLANESELGAGEIHGHEMNLSAREERQKDGRATEVCSTHYGGEELLTEAEKTLPIRSGSRFFVSENHDCCNKWKDATEFFELARADISSKEFESVNNNAISSFVTAQMGVEINNAWENDKDQNKKVNAVHTTHVLNEAAKNLENMVHGKEEDKIKLKPNKNETRQKEQVKLKIQQGFYDLEANDMKFGVAQGFMEIKKQMGCANDLEKREKPMEFRQLASELKVEQPLVSPRDIEQEKKKVVERKKNGYSLKESHITENNANKMEATENEKRAMFPEASEREKVEQKIRMFLERPEDKKRPNLVLEDDNFMGQMARERQLEGVCDMEDHGEKEKEAAKVGVSERPELAHEIEDDNKWAQDFQYREVCEKGVDDSFQHLNIGEIPRDVGRCKVTSMLVEDSQNSTDLNGTSSEHDGLKRLDDRHKVNSTIESQVHDLGISAAALQIKDDKDHLPIELACPRGMSEEFSIVDESGERKTTVIVNENLEFNKNSCVPGVCEPEVEHNVPVEMEDADIQISFDELIKRAAKETQFQSEIEHTKLEPTNSEDGLSSENSTSMDEGENIDELEDTKASLPLDRSDEKAGQAGGCIEGSVGRKKVVTGMGSFPEHPESNLSCCMEDKGKSSDQVEDKGQKVSVQGVNVRAEKGSGLKSTWENISERTWKSGEFSCEVNANHAPERKENIVNQSHTSKGKESERARSEAESENDILRKLEEEREREREREKDRMPIDRISLEPRDRVGAEARERVERAALERMTAEARQRALADARERLEKACAEARENSLAGKAATTEARVKAERAAVERATAEARERAAEKAKSDKTSFGARERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSQSFGSATVSRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILGPDSGWQPIPLTEVITAVAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER* 1434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27424959 27430718 + CsaV3_6G046420.1 Csa06g03256 534883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03256 1433 MobiDBLite consensus disorder prediction 213 229 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1196 1240 - -
Csa06g03256 1433 Gene3D DnaJ domain 1306 1433 IPR036869 -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1010 1044 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 207 256 - -
Csa06g03256 1433 PANTHER AUXILIN, ISOFORM A 15 1428 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 133 160 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 938 969 - -
Csa06g03256 1433 SUPERFAMILY Chaperone J-domain 1289 1432 IPR036869 -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1241 1267 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 289 311 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1183 1267 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1286 1305 - -
Csa06g03256 1433 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 15 1428 - -
Csa06g03256 1433 Coils Coil 1298 1333 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g03256 1433 Coils Coil 1099 1126 - -
Csa06g03256 1433 Coils Coil 350 374 - -
Csa06g03256 1433 Coils Coil 1192 1212 - -
Csa06g03256 1433 Coils Coil 1162 1186 - -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 1077 1133 - -
Csa06g03256 1433 ProSiteProfiles dnaJ domain profile. 1369 1433 IPR001623 -
Csa06g03256 1433 MobiDBLite consensus disorder prediction 123 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03256 - - - csv:101221934 2716.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02577 Csa-Chr1:22692939 Csa06g03256 Csa-Chr6:27424959 8.02E-32 transposed
Csa04g02047 Csa-Chr4:20719579 Csa06g03256 Csa-Chr6:27424959 1.43E-75 transposed
Csa06g02124 Csa-Chr6:18951382 Csa06g03256 Csa-Chr6:27424959 2.87E-59 transposed
Csa06g03813 Csa-Chr6:30258213 Csa06g03256 Csa-Chr6:27424959 9.32E-32 transposed
Csa03g04228 Csa-Chr3:37027397 Csa06g03256 Csa-Chr6:27424959 7.86E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41