Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03266 ATGGAAGTAGTTCAAGTTCTTCACATGAATGGGTCAGGAGCTGGAGATTTTAGTTATGCCAACAATTCCCTTCTTCAGTCAAAGGTGATATTGATGACGAAGCCGATTGTGGAGGAAGCGATAAACAACTTATATTGCTCCAGTTTCCCAACAAATTTCACCATAGCCGATTTGGGATGTTCTTCAGGACCAAACACTTTAATGGCAGTTTCTGAACTGATTAAAGTAGTGGAAGAAAATCGACAAAAACACAACAAACAACCAATTGAATATCAAGTATTGTTAAATGACTTACCTGGAAATGACTTCAATACAATCTTCAAATCATTGCCTAATTTCCTTGAAAAATTGAAAATGGAAATTGGAGATCATGATATTGGGCCTTGTCTCTTTAATGGGGTGCCTGGTTCTTTCTATGGAAGACTATTTTCTTCAAAAAGTGTGAATTTTATTCATTCTTCATATAGTCTTCACTGGTTGTCTAAAGTTCCAGAAGGGTTAGAGGGAAATAAGAGAAATATTTATATGGTAGATACAAGCCCAAAGAGTGTGGTGGAGGCTTATTATAAACAATTTCAAAACGATTTTGAATTGTTTTTGAAATGTAGGAGAGAAGAATTGGTGAAGGGAGGAAGTATGGTTTTAACACTTTTGGGAAGAAGAAGCCAGGATCCAACTAGTAAAGAGTGTTGTTACATTTGGGAGCTTTTGGCTATGGCTCTTAATGATATGGTTTCAGAGGGAATTATAGAAGAGGAGAAGTTAGAAAGTTTCAACATACCCAAGTACATGCCATCACCAACAGAAATGAGGATTGAGATTGAAAAAGAAGGCTCTTTTGTGGTTAATCGCATTCAAGTTTCAAAAATGGATTGGAATATTGTTTACAAAGATAATGGTAACAAAGATGATAATGGTGGGTACAATGTAGCCAAGTACATGAGAGCTGTGGCTGAGCCAATTCTTATAAGTCATTTTGGAGAAGCAATCATCGATGAATTGTTCATCAGATATGGGCAGATTATTGTGGATCGAATGGCTAAGGAGAAACTTGAGTTTGTCAATCTCACTATTTCTCTCACTAACATAAAGTAG 1095 36.16 MEVVQVLHMNGSGAGDFSYANNSLLQSKVILMTKPIVEEAINNLYCSSFPTNFTIADLGCSSGPNTLMAVSELIKVVEENRQKHNKQPIEYQVLLNDLPGNDFNTIFKSLPNFLEKLKMEIGDHDIGPCLFNGVPGSFYGRLFSSKSVNFIHSSYSLHWLSKVPEGLEGNKRNIYMVDTSPKSVVEAYYKQFQNDFELFLKCRREELVKGGSMVLTLLGRRSQDPTSKECCYIWELLAMALNDMVSEGIIEEEKLESFNIPKYMPSPTEMRIEIEKEGSFVVNRIQVSKMDWNIVYKDNGNKDDNGGYNVAKYMRAVAEPILISHFGEAIIDELFIRYGQIIVDRMAKEKLEFVNLTISLTNIK* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27482065 27484009 + CsaV3_6G046520.1 Csa06g03266 534893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03266 364 Pfam SAM dependent carboxyl methyltransferase 39 361 IPR005299 GO:0008168
Csa06g03266 364 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 362 - -
Csa06g03266 364 Gene3D - 6 349 IPR042086 -
Csa06g03266 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 361 IPR029063 -
Csa06g03266 364 Gene3D Vaccinia Virus protein VP39 22 350 IPR029063 -
Csa06g03266 364 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 362 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03266 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206474 718.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04233 Csa-Chr3:37062534 Csa06g03266 Csa-Chr6:27482065 2.28E-116 dispersed
Csa04g00554 Csa-Chr4:3683812 Csa06g03266 Csa-Chr6:27482065 1.72E-101 dispersed
Csa05g01397 Csa-Chr5:14937232 Csa06g03266 Csa-Chr6:27482065 8.75E-108 dispersed
Csa06g03261 Csa-Chr6:27448277 Csa06g03266 Csa-Chr6:27482065 2.67E-151 dispersed
Csa06g03264 Csa-Chr6:27467723 Csa06g03266 Csa-Chr6:27482065 2.47E-116 dispersed
Csa07g01009 Csa-Chr7:9311426 Csa06g03266 Csa-Chr6:27482065 8.71E-67 dispersed
Csa06g03266 Csa-Chr6:27482065 Csa06g03268 Csa-Chr6:27487071 2.36E-160 proximal
Csa06g03265 Csa-Chr6:27470946 Csa06g03266 Csa-Chr6:27482065 1.32E-142 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme08g00870 . . . . . . . . . Cmo03g00757 . . . . . . . . . . . . . . . . . . . . . . Csa06g03266 Chy02g00624 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218