Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03285 ATGGCCAAGCTTTTAAGCTTTGTTCTTGTTCTTTCCCTTCTTGCCTTTGCTCCACTCTGTTTGTGTAGCAGAAATAATGGTGGCTTTGGCTCTCTATACCCACAATATTATGACCGTTCCTGCCCCAAAGCTAAAGAAATAGTAAAATCCATTGTGGCTAAGGCTTTTGCCAGAGAAGCTCGTATTGCTGCTTCTATCCTTAGACTTCACTTCCATGACTGTTTTGTTCAGGGATGTGATGCATCTCTACTTTTGGATAGTAGTGGAAACATTAGGAGCGAGAAGAATTCAAACCCGAATAAGAACTCGGCCAGAGGATTTGAGGTGATTGATGAGATCAAATCTGCATTGGAGAAAGAGTGCCCACAAACTGTTTCTTGTGCTGATATCTTGTCTTTGGCTGCAAGAGATTCGACGTTCATTACGGGCGGACCATATTGGGAGGTTCCATTAGGAAGGAAGGACTCAAGAACAGCAAGTTTGAGTGGATCCAACAATAACATTCCCGCTCCAAACAATACTTTCCAAACCATTCTCAATAGATTCCAAAACCAAGGGCTTGACATTGTTGATCTTGTTGCCTTATCAGGAGGCCACACCATCGGAAATTCAAGGTGCACCAGCTTCAGGCAGAGGTTATACAACCAAAACGGCAACGGACAACCCGACAAAACCCTTCCTCAGTCGTTCGCGACGGACCTCCGTAGCCGTTGCCCGAGATCCGGCGGCGACAATAACCTCTTTTCCCTGGACTACAGCCCGACCAAATTCGACAACAGCTATTTTAAGAACCTGGTTGCTTTCAAAGGGCTTCTCAACTCCGACCAAGTTCTCCTCACCGGAAACGACGCGTCGGCCGCTTTGGTTAAGAAATATGCAGACGACAGCGAGGAGTTCTTCCAGCAATTCGCCAAATCTATGATCAAAATGAGTAATATTTCCCCATTGACGGGTTCAAGTGGAGAGATCAGAAAGACTTGCAGGAAGATCAACAATTAG 999 45.55 MAKLLSFVLVLSLLAFAPLCLCSRNNGGFGSLYPQYYDRSCPKAKEIVKSIVAKAFAREARIAASILRLHFHDCFVQGCDASLLLDSSGNIRSEKNSNPNKNSARGFEVIDEIKSALEKECPQTVSCADILSLAARDSTFITGGPYWEVPLGRKDSRTASLSGSNNNIPAPNNTFQTILNRFQNQGLDIVDLVALSGGHTIGNSRCTSFRQRLYNQNGNGQPDKTLPQSFATDLRSRCPRSGGDNNLFSLDYSPTKFDNSYFKNLVAFKGLLNSDQVLLTGNDASAALVKKYADDSEEFFQQFAKSMIKMSNISPLTGSSGEIRKTCRKINN* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27565675 27567365 + CsaV3_6G046710.1 Csa06g03285 534912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03285 332 Pfam Peroxidase 48 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 Gene3D Peroxidase, domain 2 169 311 - -
Csa06g03285 332 ProSiteProfiles Plant heme peroxidase family profile. 31 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PANTHER PEROXIDASE 72-RELATED 5 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Csa06g03285 332 CDD secretory_peroxidase 32 330 IPR033905 GO:0004601|GO:0042744
Csa06g03285 332 Gene3D - 36 331 - -
Csa06g03285 332 PANTHER PEROXIDASE 5 331 - -
Csa06g03285 332 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Csa06g03285 332 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03285 332 SUPERFAMILY Heme-dependent peroxidases 32 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03263 Csa-Chr3:29846147 Csa06g03285 Csa-Chr6:27565675 2.49E-70 dispersed
Csa03g04641 Csa-Chr3:40327967 Csa06g03285 Csa-Chr6:27565675 6.20E-70 dispersed
Csa06g01861 Csa-Chr6:16783402 Csa06g03285 Csa-Chr6:27565675 2.89E-51 dispersed
Csa06g03285 Csa-Chr6:27565675 Csa07g00473 Csa-Chr7:3441475 1.57E-105 dispersed
Csa01g02902 Csa-Chr1:25468972 Csa06g03285 Csa-Chr6:27565675 1.35E-88 transposed
Csa04g00461 Csa-Chr4:2879585 Csa06g03285 Csa-Chr6:27565675 1.64E-80 transposed
Csa05g02547 Csa-Chr5:26900165 Csa06g03285 Csa-Chr6:27565675 3.83E-99 transposed
Csa06g00217 Csa-Chr6:1493533 Csa06g03285 Csa-Chr6:27565675 3.01E-114 transposed
Csa04g00543 Csa-Chr4:3606838 Csa06g03285 Csa-Chr6:27565675 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03285 K00430 - csv:101204648 643.269