Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03287 ATGTGGCAGTGGGAGAATGCCACTGCCGGTGCCCTCGCCGGATTTGCCACAGTCGCCGCTATGCATCCTCTTGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCGAATCTCCCGACTTACAAGAATACGGTCAATGCAATCTACACTATTACTCGGATGGAGGGCTTGAGAGGACTATATGCAGGCTTCTATCCTGCAGTTCTCGGGTCAACTGTTTCCTGGGGTTTATATTTCTTTTTCTATGGCAGAGCCAAACAAAGATATTCTGACAGTGGAAAGAAGGACTTGAGTCCTGGTCTTCATCTTGCTTCTGCAGCAGAAGCAGGAGCTTTGGTTTGTTTTTGCACAAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGTTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTAGCCTTATGCTTCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAAGTTATTGCCAACTCAAGGTCTAAAGGGACCAGAGTCGATGCTCAAAATTCCAGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGAACTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTGTTCGAGCTCGGTTGCAGCAAAGACCAGGCCATGATGGAATCCCAAGATACATGGATAGCTTCCACGTCCTTAAGGAAACTGTACGGTTTGAGGGCATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCAGCGGCCTCAATCACGTTTATTGTGTATGAAAACGTCTTAAAGTTGCTCAAACTAACAAGACAAAAGGAATAA 921 44.52 MWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIYTITRMEGLRGLYAGFYPAVLGSTVSWGLYFFFYGRAKQRYSDSGKKDLSPGLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPSLMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQNSRELLNSGDYAVLGGTSKIAAMLLTYPFQVVRARLQQRPGHDGIPRYMDSFHVLKETVRFEGIRGFYRGITPNLLKNVPAASITFIVYENVLKLLKLTRQKE* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27571241 27576475 + CsaV3_6G046730.1 Csa06g03287 534914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03287 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 298 IPR018108 -
Csa06g03287 306 Pfam Mitochondrial carrier protein 99 192 IPR018108 -
Csa06g03287 306 Pfam Mitochondrial carrier protein 4 93 IPR018108 -
Csa06g03287 306 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
Csa06g03287 306 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 2 302 IPR044712 GO:0006862|GO:0055085
Csa06g03287 306 SUPERFAMILY Mitochondrial carrier 4 294 IPR023395 -
Csa06g03287 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 91 IPR018108 -
Csa06g03287 306 PRINTS Mitochondrial carrier protein signature 19 33 IPR002067 GO:0055085
Csa06g03287 306 PRINTS Mitochondrial carrier protein signature 162 180 IPR002067 GO:0055085
Csa06g03287 306 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
Csa06g03287 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 189 IPR018108 -
Csa06g03287 306 PANTHER BNAA09G07970D PROTEIN 2 302 - -
Csa06g03287 306 Gene3D Mitochondrial carrier domain 90 306 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03287 K15115 SLC25A32, MFT; solute carrier family 25 (mitochondrial folate transporter), member 32 - csv:101204160 603.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00794 Csa-Chr5:5561678 Csa06g03287 Csa-Chr6:27571241 5.73E-33 dispersed
Csa06g02447 Csa-Chr6:21840655 Csa06g03287 Csa-Chr6:27571241 2.86E-22 dispersed
Csa06g03287 Csa-Chr6:27571241 Csa07g01874 Csa-Chr7:18744187 1.96E-17 dispersed
Csa06g03287 Csa-Chr6:27571241 Csa02g02378 Csa-Chr2:21122110 2.26E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1048 . . . . . . . Bma15g00985 . . Cma03g00714 . . . . Cpe19g00828 Cpe10g00641 Bhi03g00909 . . . . . . Cla01g01945 . Cec04g1692 . Clacu01g2055 Cmu01g1932 . . Cone12ag0781 . . Lsi01g00639 . . Cme08g00891 . Blo06g00145 . . Bpe10g00131 . . . . Cmo03g00741 . . . . . . . . . . . . . . . . . . . . . . Csa06g03287 Chy02g00609 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010733 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32