Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03288 ATGGGAGTTTGGGTGTTTGTGTGTGTTATTTTAGGTTGGTTTTTGTTGAAGAAGAAGAAGAAGATTGTTGAGAACAAAGATGGAATTCCTAAAGGGAATTTGGGTTGGCCTTTCTTTGGTGAAACTCTTCAATTCATTTCTTCTGGCTATTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTATGGGAATGTGTTTAAAACCAACATTTTGGGGACACCCATAATAGTATCAACTGATTCAGAGGTGAATAAGGTTATCTTACAAAACCATGGGAATATATTTACCCCAGCTTACCCAAAATCAATAACAGAACTACTTGGTACATATTCAATTCTAAGAATGAAAGGAAATGTTCAAAGAAGACTTCATACAATCATTGGAGCCTTCCTTAGGTCTCCTCAACTCAAAGCCCAAATCACTAAAGATATTCAAAATACTGTTCAACTTAGACTTGCTAACTGGAATAACTCTCAATTGCATCTTCAAACTGAAGCCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGCGTGGGACCTGGTAAAGAATTGGAGACTTTAAAAAGGGAATTTGAGGAGTTTATTAAAGCTTTGATTTGTATACCTATTAAATTACCTGGAACTAGGCTATATAAATCTTTGAAGGCCAGAGAGAAGTTGTTGAAAATTGTGGGGAAGATTGTGGAAGAAAGGAAATCGATGGTGGGGGAGAAGGGTGCACCGAGAGATGCGGTGGACGTGCTCTTACAGGATCACAACGAGAACCAAGGGCTACCCCTGGATTTCATCAGCAGTCACATCATAGAGCTGATGATCCCCGGGGAGGAAACGGTACCGACGGCCATGACTCTCGCCGTTAAATTTCTCAGTGATTGTCCCCGCGCTCTTGCCCAATTAAAGGAAGAGAATATGAAACTGAAGAAGGAGAAGGATGGATCTGGGGAGGAGTATACGTGGACAGATTACATGTCTTTGCAATTTACTCAAAATGTAATTAGTGAAACATTAAGAATGGCTAATATCGTCAATGGAGTTTGGAGAAAAGCTCAAAAAGACGTGAAAATCAAAGGATATTTAATACCGCAAGGATGGTGCGTCCTGGCATCCTTTATTTCAGTTCATATGGATGAAAAGAACTATGCAAACCCACATGAGTTTGATCCGTGGAGATGGGAGGTACAATAA 1203 39.98 MGVWVFVCVILGWFLLKKKKKIVENKDGIPKGNLGWPFFGETLQFISSGYSSRPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSEVNKVILQNHGNIFTPAYPKSITELLGTYSILRMKGNVQRRLHTIIGAFLRSPQLKAQITKDIQNTVQLRLANWNNSQLHLQTEAKQITFEVLVKVLMSVGPGKELETLKREFEEFIKALICIPIKLPGTRLYKSLKAREKLLKIVGKIVEERKSMVGEKGAPRDAVDVLLQDHNENQGLPLDFISSHIIELMIPGEETVPTAMTLAVKFLSDCPRALAQLKEENMKLKKEKDGSGEEYTWTDYMSLQFTQNVISETLRMANIVNGVWRKAQKDVKIKGYLIPQGWCVLASFISVHMDEKNYANPHEFDPWRWEVQ* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27579040 27586995 + CsaV3_6G046740.1 Csa06g03288 534915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03288 400 SUPERFAMILY Cytochrome P450 29 398 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03288 400 Pfam Cytochrome P450 30 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03288 400 PANTHER CYTOCHROME P450 26 7 398 - -
Csa06g03288 400 Gene3D Cytochrome P450 18 400 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03288 400 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90C1 7 398 - -
Csa06g03288 400 PRINTS E-class P450 group IV signature 331 347 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03288 400 PRINTS E-class P450 group IV signature 56 79 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03288 400 PRINTS E-class P450 group IV signature 380 398 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03288 400 Coils Coil 302 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04086 Csa-Chr3:35819170 Csa06g03288 Csa-Chr6:27579040 6.50E-141 dispersed
Csa06g03288 Csa-Chr6:27579040 Csa05g03046 Csa-Chr5:30611740 1.84E-76 dispersed
Csa06g03288 Csa-Chr6:27579040 Csa07g02396 Csa-Chr7:22043310 8.44E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03288 K12637 - csv:101203911 787.334