Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03294 ATGTCTGGCTTTTTCACTTTAGGCGGTGGCGGCGGAGGAAGAGACGAAGAACAAAATAACAACCGCCCCAACCAATTTATTCATCCCCCGCCGGATAGCAGTTTGTTTTGGTACAAAGCCGGTAACGTGGAGCTATGGCAGCAGCAGCAGCAGCAGCAACATCATCATCATCATCAAGAACAACCTCTCTTTCAAACACAATCTCGTACTACTACTACTACTACTCCTTACTCCGCACCACTTGCCGTCCGGAACTCCGATGAGTCCTCCTCCAGATCGGGTAATTTCATGATGATAAGTTCGGGATCGGGTGGAGGTGGAATCAGCTGCCAAGATTGTGGTAACCAAGCGAAGAAAGATTGTAGTCATATGAGATGTAGGACATGTTGCAAGAGCCGAGGATTTCATTGTGAAACCCATGTAAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGTGAGCGCCAAGATAAACTTGCTGCCTTGCAAACCCATCATCATCATCATCATCAACAACAACTTCAACTCCATGGCGGCGACAATAATCCCAAACGCCATAGAGATTATAACTCCTCTTCACTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCTGAGTTGAACTCTCCAGCTGTGTTTCGTTGCGTTCGTGTTAGTTCTGCTGATGATACCGACGATCAATACGCGTATCAAACGGCGGTAAATATTGGTGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGGTGAGACCTCGTCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGAGCCGCTGATGCCACCACCGGAAGCGGTGGTTCAACCGCGGCATTACCCTTGCTTGATCCTTCTTCCTTATATTCAACGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 996 48.09 MSGFFTLGGGGGGRDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQQQHHHHHQEQPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHQQQLQLHGGDNNPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPGETSSGGGGSSSGVQPLNFIAGAADATTGSGGSTAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27622500 27625813 - CsaV3_6G046800.1 Csa06g03294 534921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03294 331 MobiDBLite consensus disorder prediction 160 188 - -
Csa06g03294 331 PANTHER PROTEIN SHORT INTERNODES 1 327 - -
Csa06g03294 331 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 212 259 IPR006511 -
Csa06g03294 331 Pfam Domain of unknown function (DUF702) 107 260 - -
Csa06g03294 331 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Csa06g03294 331 MobiDBLite consensus disorder prediction 47 93 - -
Csa06g03294 331 MobiDBLite consensus disorder prediction 63 93 - -
Csa06g03294 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 327 IPR007818 GO:0003700|GO:0006355
Csa06g03294 331 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02859 Csa-Chr5:28935755 Csa06g03294 Csa-Chr6:27622500 2.92E-37 dispersed
Csa06g02517 Csa-Chr6:22374067 Csa06g03294 Csa-Chr6:27622500 1.55E-46 dispersed
Csa06g03294 Csa-Chr6:27622500 Csa07g00507 Csa-Chr7:3658819 3.84E-63 dispersed
Csa02g02103 Csa-Chr2:19139683 Csa06g03294 Csa-Chr6:27622500 2.66E-65 wgd
Csa03g04251 Csa-Chr3:37243313 Csa06g03294 Csa-Chr6:27622500 2.12E-60 wgd
Csa04g00536 Csa-Chr4:3546817 Csa06g03294 Csa-Chr6:27622500 3.10E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32165 PF05142 DUF702 3.90E-67 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03294 - - csv:101207689 598.201