Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03295 ATGGCTCTTGGAAGGCCTCGTAGTAGCAAAAGATCATCCTCCTCTTCTTCCTATGCTTCAACCGTTACAACTGTCGTCTTCTTAGCCTTATGTGTTCTTGGAGTATGGATGCTGACCTCCAACTCTGCTGTTCCCCCGCAAACCACCACTCGCACTTCTTCTGACTCTTCAACTTCCTCCACCTCCACCATTGCCACCACCACTGACTTTGTGTCTTCCTCTGAGGAACCCCAACTCCCCAAATCCGAGGACAAAGAGTCCACTCCTGCCTTTGAGGATAATCCTGGTGACCTCCCTCTTGATGCGATTAAATCCGATGATAGTTCTAATATTGTTAGCGATAATGATGCAAAATCTCGTGAGGATCGTCCCAAGGATAACGCCAATGATGTGCAAGAACCTAGAGATAACAATGAGGCTCAATTGTCGGAAGAGAGTACAATGACTCAAAACCAACAAGTGGAAGCAACCCAAAAAATTGAAGAGAAATTAGATTTGGGAGGAAACCAAGAACAAAATACTAATTTACCTGATCAAAGCAATGAATCAACAGAGCATGTAGAATCTGACAATAGTAAATCCAATGATACACCCAATGATACATCGTTGGAAATCAATGGGCAAGAACAACAGCAGCAGCAGCAACAACAACCGGAAGAACCTGAAAACAACGCTAATCCACAAGATATTCAAGCAACAATCGCAAACATAGAGCAACAACAAGCAACCGATATCCCGGAAATAAGTGGAGACTCCCAAAACGATCAACCGAAACTTGGGACTGAAGGCGAAAAAATTACACAAGAACCTGAAATTCATAACCAGGATGATGATAAGGCCCAACAACAGACACAACAGCAACAAGAACAGGACAGCTCAAACACGAATAACAACAATGAAGAAACTCCCTCATTGGAGCAAAATCAACCACGAAAGAGACACCGAGGCAAAAATAAGTCAACTGAGGATCAAGAATCCCAACAAACAGAATCCAAAGAGAGCCAAGAAGTCCCAAAGGACTCGAAAACGGAAATCAAAGTGGAAGAGACAACTACAGCAGGGTCACTCGAGACCTCGGGGATACCCAAGGAGTCAAAGGAGTCCAAAAAGTCATGGTCAACGCAGGCAGCGCAGTCAGAGAACGAGAAAGATCGTCGACGAGAAGAATCAAGCAGTGATGGCAGCATCTATGGGTACACATGGCAGATGTGCAATGTCACAGCGGGACCTGATTACATTCCTTGTTTGGATAACGAGAAAGCAATTAAGCAGCTACGTACGACAAAACACTTCGAGCACAGGGAGAGACACTGCCCGGAGGAGGGACCTACCTGCTTGGTCTCTCTCCCGGAAGGTTACAAAAGATCCATTGAATGGCCTAGAAGTAGAGACAAGATTTGGTACCACAATGTACCACATACAAAACTTGCTGAAGTGAAAGGCCACCAAAATTGGGTCAAGGTCACCGGTGAGTTCTTGACTTTCCCCGGCGGTGGCACCCAGTTCATCCACGGCGCTTTGCACTACATAGAATTTCTTCAACAATCGGTACCGGATATTGCATGGGGAAAGAGAACAAGAGTGATATTGGACGTAGGCTGTGGAGTCGCCAGCTTCGGCGGCTTTCTGTTTGAAAAAGATGTGCTTACAATGTCGTTTGCTCCAAAAGACGAACATGAAGCTCAAGTCCAATTTGCCCTGGAGAGGGGAATTCCAGCCATTTCTGCTGTTATGGGCTCACAACGTCTGCCATTTCCAAGCATGGTTTTTGATACTATTCACTGTGCTCGATGTAGAGTGCCTTGGCATGTAGAAGGTGGAATGCTTCTTTTAGAATTGAATCGAGTGCTGAGACCAGGGGGTTTTTTTGTTTGGTCCGCAACTCCAGTGTACCAGACCCTAGAAGAAGACGTTGAGATTTGGAAAGAAATGTCTGCTTTGACGAAATCTATGTGTTGGGAGCTTGTGACAATTCAAAAGGACAAGCTGAACTCCGTAGGCGCTGCCATTTACAGGAAACCAATCTCAAACGAATGCTACGATCAAAGAAAACACAAGCGTCCCCCAATGTGCAAAAACGATGACGACCCAAACGCTGCATGGTATGTGCCACTGCAGGCATGCATGCACCGTGCGCCGGTTGACAACACTGTGAGAGGAAGCAGCTGGCCAGAGCAATGGCCTCAGAGGTTGCAAGCACCACCTTACTGGCTAAATAGCTCCCAAATGGGGGTTTATGGCAAACCGGCTCCTCAAGATTTCTCAACTGATTATGAACATTGGAAAAGAGTAGTGAATAAAACTTACATGAATGGATTAGGCATAAATTTGTCCAACATTAGGAATGTGATGGATATGAGATCTGTTTATGGCGGGTTTGCAGCAGCTCTGAGAGACCTTAAAGTCTGGGTAATGAATGTGGTGAATATTGACTCTCCCGATACACTTCCAGTGATCTACGAGCGCGGTCTCTTCGGAATTTACCATGATTGGTGTGAATCCTTCAGCACATATCCAAGAACATATGATCTACTACATGCTGATCATCTTTTCTCCAAATTGAAAAAGAGATGCAAACTGCAACCTGTCTTGGCAGAGGTCGACCGAATAGTAAGACCTGGAGGCAAATTGATCGTTCGAGATGAGTCCAGTACAATTGGAGAAGTGGAGAACTTGTTGAAGTCTCTCCGTTGGGAAGTTCACCTGACCTTCTCCAAAAACCAGGAAGGGCTGCTGAGTGCTCAGAAAGGTGATTGGCGACCAGATACTTATGCTGAGTCTTCCTGA 2787 45.57 MALGRPRSSKRSSSSSSYASTVTTVVFLALCVLGVWMLTSNSAVPPQTTTRTSSDSSTSSTSTIATTTDFVSSSEEPQLPKSEDKESTPAFEDNPGDLPLDAIKSDDSSNIVSDNDAKSREDRPKDNANDVQEPRDNNEAQLSEESTMTQNQQVEATQKIEEKLDLGGNQEQNTNLPDQSNESTEHVESDNSKSNDTPNDTSLEINGQEQQQQQQQQPEEPENNANPQDIQATIANIEQQQATDIPEISGDSQNDQPKLGTEGEKITQEPEIHNQDDDKAQQQTQQQQEQDSSNTNNNNEETPSLEQNQPRKRHRGKNKSTEDQESQQTESKESQEVPKDSKTEIKVEETTTAGSLETSGIPKESKESKKSWSTQAAQSENEKDRRREESSSDGSIYGYTWQMCNVTAGPDYIPCLDNEKAIKQLRTTKHFEHRERHCPEEGPTCLVSLPEGYKRSIEWPRSRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIEFLQQSVPDIAWGKRTRVILDVGCGVASFGGFLFEKDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSMVFDTIHCARCRVPWHVEGGMLLLELNRVLRPGGFFVWSATPVYQTLEEDVEIWKEMSALTKSMCWELVTIQKDKLNSVGAAIYRKPISNECYDQRKHKRPPMCKNDDDPNAAWYVPLQACMHRAPVDNTVRGSSWPEQWPQRLQAPPYWLNSSQMGVYGKPAPQDFSTDYEHWKRVVNKTYMNGLGINLSNIRNVMDMRSVYGGFAAALRDLKVWVMNVVNIDSPDTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKLQPVLAEVDRIVRPGGKLIVRDESSTIGEVENLLKSLRWEVHLTFSKNQEGLLSAQKGDWRPDTYAESS* 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27636191 27639806 + CsaV3_6G046810.1 Csa06g03295 534922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03295 928 MobiDBLite consensus disorder prediction 306 347 - -
Csa06g03295 928 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 724 899 IPR029063 -
Csa06g03295 928 MobiDBLite consensus disorder prediction 262 278 - -
Csa06g03295 928 MobiDBLite consensus disorder prediction 43 394 - -
Csa06g03295 928 Gene3D Vaccinia Virus protein VP39 508 677 IPR029063 -
Csa06g03295 928 PANTHER METHYLTRANSFERASE PMT27-RELATED 312 926 - -
Csa06g03295 928 PANTHER METHYLTRANSFERASE PMT27-RELATED 8 293 - -
Csa06g03295 928 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 434 679 IPR029063 -
Csa06g03295 928 MobiDBLite consensus disorder prediction 43 77 - -
Csa06g03295 928 MobiDBLite consensus disorder prediction 194 261 - -
Csa06g03295 928 MobiDBLite consensus disorder prediction 279 305 - -
Csa06g03295 928 MobiDBLite consensus disorder prediction 111 140 - -
Csa06g03295 928 MobiDBLite consensus disorder prediction 141 157 - -
Csa06g03295 928 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 411 915 IPR004159 GO:0008168
Csa06g03295 928 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 8 293 IPR004159 GO:0008168
Csa06g03295 928 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 312 926 IPR004159 GO:0008168
Csa06g03295 928 MobiDBLite consensus disorder prediction 167 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03295 - - - csv:101207445 1734.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04205 Csa-Chr3:36868813 Csa06g03295 Csa-Chr6:27636191 0 dispersed
Csa05g00741 Csa-Chr5:5067866 Csa06g03295 Csa-Chr6:27636191 6.12E-174 dispersed
Csa05g00840 Csa-Chr5:6252765 Csa06g03295 Csa-Chr6:27636191 0 dispersed
Csa06g00135 Csa-Chr6:880356 Csa06g03295 Csa-Chr6:27636191 2.64E-169 dispersed
Csa06g03295 Csa-Chr6:27636191 Csa03g00921 Csa-Chr3:7578971 5.95E-139 dispersed
Csa06g03295 Csa-Chr6:27636191 Csa07g00900 Csa-Chr7:7217745 1.58E-15 transposed
Csa06g03295 Csa-Chr6:27636191 Csa06g02742 Csa-Chr6:23959866 1.58E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1064 . . Bda04g00033 Bda10g00167 Bpe15g00369 . Bma09g00097 Bma15g00971 . . Cma03g00706 Cma07g00451 Car03g00647 Car07g00398 Sed14g1170 Cpe19g00838 Cpe10g00647 Bhi03g00898 Tan03g2044 Cmetu04g1166 . Hepe04g1565 . . Cla01g01953 Cam01g2042 Cec04g1700 Cco04g1765 Clacu01g2064 Cmu01g1941 Cre04g1615 . . Cone6ag1660 . Lsi01g00630 . . Cme08g00900 Blo05g00816 Blo06g00330 . . Bpe10g00139 Bpe06g00031 . . . Cmo03g00732 Cmo07g00448 . . . . . . . . . . . . . . . . . . . . . Csa06g03295 Chy02g00601 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85