Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03296 ATGATGACGACGACGACGACGACGATGATGCGGGGATTTCATTTTCAGTTGACTCTGGTTCTGGCGGTGATCACTCTCGCCGCCCTTTATCCTAGAGATGCCCTTACCGGAGCTGAAGCTGCCACTTCCACTTCCGCTTTCGTTCAGAACGTCATCTACTCTAACAGGATTGCTATGTTCTCCAAATCCTACTGCCCATATTGCTTGGGTGCCAAACGTATATTCAGCGAACTCCATGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGATCTCAAATTCAGAGTGTTCTACTAGACCTGACTGGAAAGCGGACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCTCTGATGATCTGAAGGCTGCGGTTGCCAATGGTCAGTTGCAGAAACTTCTGGCTTCAACTTGA 426 47.42 MMTTTTTTMMRGFHFQLTLVLAVITLAALYPRDALTGAEAATSTSAFVQNVIYSNRIAMFSKSYCPYCLGAKRIFSELHEKPFVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVANGQLQKLLAST* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27640533 27641775 - CsaV3_6G046820.1 Csa06g03296 534923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03296 141 PANTHER GLUTAREDOXIN-C3 23 140 - -
Csa06g03296 141 PRINTS Glutaredoxin signature 57 75 IPR014025 -
Csa06g03296 141 PRINTS Glutaredoxin signature 102 115 IPR014025 -
Csa06g03296 141 PRINTS Glutaredoxin signature 116 129 IPR014025 -
Csa06g03296 141 Gene3D Glutaredoxin 38 141 - -
Csa06g03296 141 TIGRFAM GRX_euk: glutaredoxin 57 138 IPR011899 -
Csa06g03296 141 PANTHER GLUTAREDOXIN 2 23 140 - -
Csa06g03296 141 SUPERFAMILY Thioredoxin-like 46 139 IPR036249 -
Csa06g03296 141 Pfam Glutaredoxin 57 119 IPR002109 -
Csa06g03296 141 ProSiteProfiles Glutaredoxin domain profile. 45 141 - -
Csa06g03296 141 CDD GRX_GRXh_1_2_like 56 137 - -
Csa06g03296 141 ProSitePatterns Glutaredoxin active site. 59 74 IPR011767 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03296 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101222985 263.462
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02197 Csa-Chr1:19059785 Csa06g03296 Csa-Chr6:27640533 2.16E-39 dispersed
Csa01g02198 Csa-Chr1:19062376 Csa06g03296 Csa-Chr6:27640533 4.68E-35 dispersed
Csa06g00722 Csa-Chr6:5882779 Csa06g03296 Csa-Chr6:27640533 3.46E-20 dispersed
Csa06g03296 Csa-Chr6:27640533 Csa07g01791 Csa-Chr7:18222416 4.75E-09 dispersed
Csa06g03296 Csa-Chr6:27640533 Csa05g01907 Csa-Chr5:22234444 1.27E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28