Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03298 ATGGAATTCTCTCTTCATTTCTTCTTCCTCTTTCTTTTTTCATCTCTCTTCTTTCGGTTCTCTGATTCATGTCATCCCACTGACAAACAAGCACTTCTCCACTTCAAAGCCAAAATCACTTTTGACCCATCTCAGCTACTCCTTTCTTGGAAATCTACCACTGACTGCTGCTCCTCCTGGGACGGCGTCGCCTGTGATTCCTCCGGCAGAGTCACCAATCTCACCCGCCCTGGGATTGTCTCCGGCACTGACTTCATCGCTGATACTTTTATGTCTGGTTCTCTCTCCCCTTTTCTTGGAAACTTGTCGTCTCTTCAATTTCTTGACCTTAGTAATCTCAAAGATATCAACGGTCGAATTCCCTTGGAATTTGGCAAGTTATCACGACTCACTCATTTGTTTCTCGATTCCAATAAACTCGTGGGTTCCATTCCTAGAACTTTTGGGTGTCTTTTTCGATTGGAAAAACTCTATCTTGGCAATAATTTGCTCTCTGGAATCATCCCTCCTTCAACTTTTACCCATTTCAAGTGTCTTGAAGAATTGGGTCTTTCCGGAAATAGACTATCTGGGTCGATTCCTAGTTCAATTGGGAAGCTAATCCAGGTGAAAAATCTCGATCTCCATGCCAACAATTTCTCAGGAAGCATTCCTATGAGTATTGGTAAACTTAAAAGTCTCAAGTATCTCGATTTGTCTGAAAACGAAATAACAGGGAGCATTCCAAATTCGATTGGTGAACTCTCTGAGTTGGTATTGCTTTACCTTAATCAGAACAAGATTACCGGAAGTATTCCCCCTTCGATTGCCGGACTAGGTTCTCTGATATTCTGCCGTTTGTCGGAAAATAGGCTTAGTGGTCGGTTACCGGCGTCCATCGGTAAGCTTCAAAAGATACAGAGACTGATTCTTGAGAACAACAAGCTTACTGGGAAATTGCCTTCTTCTATTGGCCGTTTAACAACGTTAACCGATTTGTTCTTCTCTAACAATCTTTTTACTGGCAAGATTCCCAAGACATTTGGAAATTTAGAAAACCTTCAAACTTTAGAATTGTCGAGAAATTTGCTTTCTGGTGGGATTCCTCATCAGTTATCTAAATTGCAGAGACTACAGAGCCTGGATCTTTCCTTTAATCCTCTTGAGTTGCGAAGCATACCAAATTGGTTTGCAAAGATGAAAATTTTTAGGCTATTCTTAGCTAAAACAGGGATTGAAGGGAAGCTTCCAAAATGGTTGTCTTCATCCTCAATATCGGTTCTTGATTTATCGAGCAATGGATTAACAGGGCCGTTGCCTCATTGGATTGGAAATATGACAAATCTTTCATTCCTCAACCTTTCAAATAACGGATTTCATTCATCAATCCCAGCTGAATTCAAAAACCTTTTGCTGTTAATGGATCTTGATCTTCACTCCAACCACTTTACAGGGTGCCTTGACAACATATTTTCAAAAGGGGTTCAAGACCCACTAGGCCATTTCAATTCCATTGATGTTTCTGGGAATCACTTCAGTGGTTGTGTTGATCAGAATATTGGAGACAGAGCAGCAATGTCTTCAATCAAATCACTTGTTTTATCAAACAATAAATTGGAAGGATATATCCCCAAGTCGTTGTCGAAACTCATCGAATTGCAGGTGCTGGAGCTGGCTGATAACCGGATTTCCGGTGAAATTCCGGCAGAGCTGGGAGAGGCGGCAGAATTAACCACGATTTTGCTTTCGAAGAATAAGCTATGTGGGACGATTCCGAAAGAGGTGTTGAATTTGAAGAAGCTTTGGAAATTCGACGTGTCGGAAAACAGACTTTGTGGGAAAATTCCACCGCATAAAGCACATTTCCCAGTCTCTTCATTCAAACATAACCGTGGACTTTGTGGAACTCCTCTTCCCCCTTGCAACCATTCTTAG 1914 41.48 MEFSLHFFFLFLFSSLFFRFSDSCHPTDKQALLHFKAKITFDPSQLLLSWKSTTDCCSSWDGVACDSSGRVTNLTRPGIVSGTDFIADTFMSGSLSPFLGNLSSLQFLDLSNLKDINGRIPLEFGKLSRLTHLFLDSNKLVGSIPRTFGCLFRLEKLYLGNNLLSGIIPPSTFTHFKCLEELGLSGNRLSGSIPSSIGKLIQVKNLDLHANNFSGSIPMSIGKLKSLKYLDLSENEITGSIPNSIGELSELVLLYLNQNKITGSIPPSIAGLGSLIFCRLSENRLSGRLPASIGKLQKIQRLILENNKLTGKLPSSIGRLTTLTDLFFSNNLFTGKIPKTFGNLENLQTLELSRNLLSGGIPHQLSKLQRLQSLDLSFNPLELRSIPNWFAKMKIFRLFLAKTGIEGKLPKWLSSSSISVLDLSSNGLTGPLPHWIGNMTNLSFLNLSNNGFHSSIPAEFKNLLLLMDLDLHSNHFTGCLDNIFSKGVQDPLGHFNSIDVSGNHFSGCVDQNIGDRAAMSSIKSLVLSNNKLEGYIPKSLSKLIELQVLELADNRISGEIPAELGEAAELTTILLSKNKLCGTIPKEVLNLKKLWKFDVSENRLCGKIPPHKAHFPVSSFKHNRGLCGTPLPPCNHS* 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27643194 27646064 + CsaV3_6G046840.1 Csa06g03298 534925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03298 637 PRINTS Leucine-rich repeat signature 227 240 - -
Csa06g03298 637 PRINTS Leucine-rich repeat signature 368 381 - -
Csa06g03298 637 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Csa06g03298 637 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Csa06g03298 637 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Csa06g03298 637 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Csa06g03298 637 Gene3D Ribonuclease Inhibitor 290 386 IPR032675 -
Csa06g03298 637 SUPERFAMILY L domain-like 397 634 - -
Csa06g03298 637 Gene3D Ribonuclease Inhibitor 387 637 IPR032675 -
Csa06g03298 637 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Csa06g03298 637 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 7 637 - -
Csa06g03298 637 SMART LRR_typ_2 439 462 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 151 175 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 224 248 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 176 200 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 296 320 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 127 150 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 368 392 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 519 542 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 344 367 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 543 567 IPR003591 -
Csa06g03298 637 SMART LRR_typ_2 463 486 IPR003591 -
Csa06g03298 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 637 - -
Csa06g03298 637 SUPERFAMILY RNI-like 95 499 - -
Csa06g03298 637 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Csa06g03298 637 SMART LRR_sd22_2 368 388 - -
Csa06g03298 637 SMART LRR_sd22_2 176 208 - -
Csa06g03298 637 SMART LRR_sd22_2 224 250 - -
Csa06g03298 637 SMART LRR_sd22_2 320 346 - -
Csa06g03298 637 SMART LRR_sd22_2 151 172 - -
Csa06g03298 637 Gene3D Ribonuclease Inhibitor 25 193 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03298 - - - csv:101207198 1228.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03298 Csa-Chr6:27643194 Csa06g03768 Csa-Chr6:29987631 4.18E-18 dispersed
Csa01g02230 Csa-Chr1:19343063 Csa06g03298 Csa-Chr6:27643194 4.83E-14 transposed
Csa02g02506 Csa-Chr2:22072407 Csa06g03298 Csa-Chr6:27643194 3.92E-39 transposed
Csa03g02922 Csa-Chr3:27860063 Csa06g03298 Csa-Chr6:27643194 1.72E-10 transposed
Csa04g02231 Csa-Chr4:22984097 Csa06g03298 Csa-Chr6:27643194 3.27E-09 transposed
Csa05g01732 Csa-Chr5:20638434 Csa06g03298 Csa-Chr6:27643194 1.93E-13 transposed
Csa05g02092 Csa-Chr5:24198831 Csa06g03298 Csa-Chr6:27643194 4.88E-108 transposed
Csa05g02392 Csa-Chr5:26079359 Csa06g03298 Csa-Chr6:27643194 8.31E-130 transposed
Csa05g02499 Csa-Chr5:26643635 Csa06g03298 Csa-Chr6:27643194 1.91E-08 transposed
Csa06g01368 Csa-Chr6:11631462 Csa06g03298 Csa-Chr6:27643194 9.25E-19 transposed
Csa04g01400 Csa-Chr4:14033000 Csa06g03298 Csa-Chr6:27643194 1.64E-26 transposed
Csa04g00564 Csa-Chr4:3735201 Csa06g03298 Csa-Chr6:27643194 1.67E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31