Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03299 ATGGACATCGAGTCTGCTTTCAAATCCACCCCCAAACTTCTTTTCGATGACTTTTGGTCTTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTCGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGAAGAAAAAAACAACCATTCCTCCGTTTCTCCTCCCCTTCAACTTCAACAAGTACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTACTTCAACAGATTTTGAAGACCTTGACTGGCTCTCTCATCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCCCCAACTCCCTCTGTTTTCTTGACACACAAACCTAGAAATCCCCTTCCCAATTTTCATTCTTATCTCAACACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAGATCTCCGCCCGAGTCTGGTCTTTAACGAATTTAATTCCATCCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCATACAGACGAGGGCTCCGGGCGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGCCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGACGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGAGAGAGACCCCAGTCCGGCATGGACTTAGTGTAA 807 48.2 MDIESAFKSTPKLLFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDEEKNNHSSVSPPLQLQQVHHDTDQNSNHSSTNSSEDDFWSITSTDFEDLDWLSHLVADSTQEEYSAPTPSVFLTHKPRNPLPNFHSYLNTPFPSKPRTKRPKISARVWSLTNLIPSPLPAKKSKKNHTDEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKERERPQSGMDLV* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27648371 27649177 + CsaV3_6G046850.1 Csa06g03299 534926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03299 268 PIRSF Txn_fac_GATA_plant 6 266 IPR016679 GO:0003677|GO:0005634|GO:0045893
Csa06g03299 268 MobiDBLite consensus disorder prediction 254 268 - -
Csa06g03299 268 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 MobiDBLite consensus disorder prediction 166 186 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 169 259 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Csa06g03299 268 MobiDBLite consensus disorder prediction 172 186 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 169 259 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Csa06g03299 268 SMART GATA_3 185 239 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 MobiDBLite consensus disorder prediction 68 87 - -
Csa06g03299 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 248 - -
Csa06g03299 268 MobiDBLite consensus disorder prediction 238 268 - -
Csa06g03299 268 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 Gene3D - 186 265 IPR013088 GO:0006355|GO:0008270
Csa06g03299 268 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 CDD ZnF_GATA 190 239 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03299 Csa-Chr6:27648371 Csa07g02450 Csa-Chr7:22371588 1.35E-37 dispersed
Csa06g03299 Csa-Chr6:27648371 Csa04g00528 Csa-Chr4:3481016 2.69E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32166 PF00320 GATA 1.10E-16 CL0167 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03299 - K21630 csv:105435937 548.125