Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03299 ATGGACATCGAGTCTGCTTTCAAATCCACCCCCAAACTTCTTTTCGATGACTTTTGGTCTTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTCGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGAAGAAAAAAACAACCATTCCTCCGTTTCTCCTCCCCTTCAACTTCAACAAGTACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTACTTCAACAGATTTTGAAGACCTTGACTGGCTCTCTCATCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCCCCAACTCCCTCTGTTTTCTTGACACACAAACCTAGAAATCCCCTTCCCAATTTTCATTCTTATCTCAACACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAGATCTCCGCCCGAGTCTGGTCTTTAACGAATTTAATTCCATCCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCATACAGACGAGGGCTCCGGGCGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGCCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGACGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGAGAGAGACCCCAGTCCGGCATGGACTTAGTGTAA 807 48.2 MDIESAFKSTPKLLFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDEEKNNHSSVSPPLQLQQVHHDTDQNSNHSSTNSSEDDFWSITSTDFEDLDWLSHLVADSTQEEYSAPTPSVFLTHKPRNPLPNFHSYLNTPFPSKPRTKRPKISARVWSLTNLIPSPLPAKKSKKNHTDEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKERERPQSGMDLV* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27648371 27649177 + CsaV3_6G046850.1 Csa06g03299 534926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03299 268 PIRSF Txn_fac_GATA_plant 6 266 IPR016679 GO:0003677|GO:0005634|GO:0045893
Csa06g03299 268 MobiDBLite consensus disorder prediction 254 268 - -
Csa06g03299 268 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 MobiDBLite consensus disorder prediction 166 186 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 169 259 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Csa06g03299 268 MobiDBLite consensus disorder prediction 172 186 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 169 259 - -
Csa06g03299 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Csa06g03299 268 SMART GATA_3 185 239 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 MobiDBLite consensus disorder prediction 68 87 - -
Csa06g03299 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 248 - -
Csa06g03299 268 MobiDBLite consensus disorder prediction 238 268 - -
Csa06g03299 268 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 Gene3D - 186 265 IPR013088 GO:0006355|GO:0008270
Csa06g03299 268 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Csa06g03299 268 CDD ZnF_GATA 190 239 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03299 - - K21630 csv:105435937 548.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03299 Csa-Chr6:27648371 Csa07g02450 Csa-Chr7:22371588 1.35E-37 dispersed
Csa06g03299 Csa-Chr6:27648371 Csa04g00528 Csa-Chr4:3481016 2.69E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02256 CCT,ECH 1 224 C2C2-Gata Transcription Factor Family AT5G25830 56.3 1.2e-59 227.3
Csa06g03299 . 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 6.6e-37 151.4
Csa02g02256 CCT,ECH 35 189 C2C2-Gata Transcription Factor Family AT3G60530 53.4 7.7e-37 151.0
Csa04g00528 . 17 300 C2C2-Gata Transcription Factor Family AT5G66320 51.7 1.3e-66 250.4
Csa04g00528 . 23 296 C2C2-Gata Transcription Factor Family AT3G51080 50.5 1.4e-54 210.3
Csa06g03299 . 95 256 C2C2-Gata Transcription Factor Family AT4G36240 53.5 1.7e-41 166.4
Csa02g02256 CCT,ECH 3 224 C2C2-Gata Transcription Factor Family AT4G32890 52.4 7.3e-48 188.0
Csa03g04676 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.5 2.0e-135 479.6
Csa03g00234 . 3 446 C2C2-Gata Transcription Factor Family AT4G17570 50.3 1.5e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32166 PF00320 GATA 1.10E-16 CL0167 Csa TF