Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03302 ATGGATTCTCAATCTCTTCTTCAACCTCTCAATATGGCAGTCTTTTTCACTCTCCCTTTCTTGGTTCTGCTGACACTTCTGATCTTCCGTCGTCTCCGGCCAAAACTACCCTTTCCACCTGGCCCAAAAGGCCTCCCCTTCATCGGTAATATGCTCATGTTAGACCAGCTCACTCACCGTGGTCTCGCCAAACTTGCCGCACGCTACGGCGGAATCTTCTATATGCGCATGGGCTTTCTTAACATGTTCACTGTCGCCGATCCTGACATCGCTCGCCAAGTTCTTCAGGTCCATGATAGTATTTGTTCTAATCGTCCGGCCACTATCGCCATATCTTACTTAACCTACAGTCGTGCCGATATGGCTTTTGCTAACTACGGCCCATTCTGGCGACAAATGCGTAAGATTTGCGTCATGAAATTATTCAGCCGAAAGCGAGCTGAGTCATGGCAATCGGTCCGAGATGTGGTAGACAACACTGTTAAAAAAGTCGCTGTCCAAACAGGGACCGCTGTGAATGTTGGGGAGCTAGTGTTTGAACTAACGAGAGATATTATTTATAGAGCTGCGTTTGGGACGAGCACATTACAGGGTCAAGACGAGTTTATAAGTATCTTGCAGGAATTCTCTAAGCTTTTTGGAGCTTTCAATATCGCTGATTTCATTCCGGGTCTTAGATGGATTGACCCTCAAGGTTTGAACAAGAGGCTCATTGAGGCTCGTCAATCCCTCGACAAATTCATCGATTCCATAATCGACGAACACATAATGAAAAAAAGGAACGCTTCTTCAAAATTATCAAATTACAAGCTCGAAACTGAGAGTGATATGGTAGATGAGTTACTGGCTTTTTACAGTGATGATTCATCGATAATAAATGAATCAAATGATATACAAAACAACATCAAACTCAACCGTGACAACATCAAAGGCATCATCATGGATGTTATGTTTGGTGGAACGGAGACGGTAGCGTCGGCGATAGAGTGGGCCATGTCGGAGCTAATGAGAAGCCCAGAAGATTTAAAGAAAGCACAGCAAGAACTCTCCCAAGTCGTTGGTCTCCAACGACGTGTCGAAGAAACCGACCTCGACAACTTGACTTTCTTAAAGTGCTGTCTCAAGGAGACCATCCGGCTGCACCCGCCGATCCCACTCCTCCTCCACGAGGCAGCGGAGGACGCGGTCATCGCCGGCTACTTCATTCCGGCAAAATCTCGAATCATGGTGAACGCGTGGGCCATCGGGAGGGATCCGGCCTCATGGGACGACGCCGAGACATTCCGGCCGGCCAGGTTTCTAGAAGAAGGAGTCCCAGATTTCAAAGGGAACAACTTCGAGTTCATTCCGTTCGGATCGGGAAGGCGGTCTTGCCCAGGGATGCAGCTGGGTCTATACGGACTTGAGATTGCGGTGGCCCACTTGTTGCACTGTTTCGATTGGGAATTGCCGGATGGGATGAAGCCAAGCGAAATGGACATGAGCGACGTCTTCGGGTTGACAGCTCCGAGAGCGACCCGGCTTGTGGCTGTGCCCACAAAACGGGTTTTGTGTCCACTTCTGTGA 1566 48.66 MDSQSLLQPLNMAVFFTLPFLVLLTLLIFRRLRPKLPFPPGPKGLPFIGNMLMLDQLTHRGLAKLAARYGGIFYMRMGFLNMFTVADPDIARQVLQVHDSICSNRPATIAISYLTYSRADMAFANYGPFWRQMRKICVMKLFSRKRAESWQSVRDVVDNTVKKVAVQTGTAVNVGELVFELTRDIIYRAAFGTSTLQGQDEFISILQEFSKLFGAFNIADFIPGLRWIDPQGLNKRLIEARQSLDKFIDSIIDEHIMKKRNASSKLSNYKLETESDMVDELLAFYSDDSSIINESNDIQNNIKLNRDNIKGIIMDVMFGGTETVASAIEWAMSELMRSPEDLKKAQQELSQVVGLQRRVEETDLDNLTFLKCCLKETIRLHPPIPLLLHEAAEDAVIAGYFIPAKSRIMVNAWAIGRDPASWDDAETFRPARFLEEGVPDFKGNNFEFIPFGSGRRSCPGMQLGLYGLEIAVAHLLHCFDWELPDGMKPSEMDMSDVFGLTAPRATRLVAVPTKRVLCPLL* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27665594 27668783 + CsaV3_6G046880.1 Csa06g03302 534929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03302 521 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 7 520 - -
Csa06g03302 521 Gene3D Cytochrome P450 32 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 SUPERFAMILY Cytochrome P450 30 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PANTHER CYTOCHROME P450 84A1-RELATED 7 520 - -
Csa06g03302 521 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 Pfam Cytochrome P450 39 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03302 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03302 Csa-Chr6:27665594 Csa06g03198 Csa-Chr6:27127202 5.01E-126 dispersed
Csa04g00530 Csa-Chr4:3492555 Csa06g03302 Csa-Chr6:27665594 3.11E-22 transposed
Csa07g00030 Csa-Chr7:425377 Csa06g03302 Csa-Chr6:27665594 0 transposed
Csa05g01237 Csa-Chr5:13031807 Csa06g03302 Csa-Chr6:27665594 5.39E-126 transposed
Csa04g00529 Csa-Chr4:3491229 Csa06g03302 Csa-Chr6:27665594 4.49E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03302 K09755 - csv:101205783 962.6