Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03304 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTCCAGCTACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTTGCAAATCCAAGTGAAGTTCCTCGCTGTGATATTTGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATCGTTCATGTTGGTGGTAAAAGAATGCACAAGAGATATCTCCGTCTGAGGCAGAGAGTTGAGTTTCCAGGGGATAAACAAAATGATGTGAAGGACCTAAATGTAAAACCGACGGAACAGGTTGAGAAAGTAAAAAGCCAAAATGAAGAGAGGGGTGAGAATGAAAAGCATGAAGAGTTGAGGGTGTCAGGTGTTACAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGCCTAATAAAGTGATTGATTTAAACATGTAG 507 41.42 MRILCDSCESAPATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDVKDLNVKPTEQVEKVKSQNEERGENEKHEELRVSGVTKDYSNGDGHSKRPNKVIDLNM* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27677901 27679613 - CsaV3_6G046900.1 Csa06g03304 534931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03304 168 CDD Bbox1_BBX-like 4 47 - -
Csa06g03304 168 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Csa06g03304 168 Gene3D Classic Zinc Finger 1 95 - -
Csa06g03304 168 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa06g03304 168 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Csa06g03304 168 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Csa06g03304 168 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa06g03304 168 SMART bboxneu5 51 96 IPR000315 GO:0008270
Csa06g03304 168 MobiDBLite consensus disorder prediction 107 168 - -
Csa06g03304 168 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Csa06g03304 168 MobiDBLite consensus disorder prediction 107 145 - -
Csa06g03304 168 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03304 Csa-Chr6:27677901 Csa07g00027 Csa-Chr7:395757 6.19E-21 dispersed
Csa02g02104 Csa-Chr2:19152113 Csa06g03304 Csa-Chr6:27677901 5.35E-22 wgd
Csa04g00581 Csa-Chr4:3819528 Csa06g03304 Csa-Chr6:27677901 4.40E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32168 PF00643 zf-B_box 2.80E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03304 - - csv:101206016 347.821