Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03305 ATGAAGCCTCTTCTGTTTTTTTTTGTGTTCCTTTGCGGTGGTTTGTTTTCCTCCTCCGCCGATACCGGCGCACAAACCCAACTGGAGATTCAGGCATTGATGTCCTTTAAACTTAATTTACATGACCCTCTTGGTGCATTGACTGCTTGGGATTCTTCCACCCCGTTAGCGCCATGTGACTGGCGGGGTGTTGTTTGTACTAATAATCGAGTCACTGAGCTCCGTTTGCCTCGTCTTCAACTCTCCGGCAGGTTGACCGATCAGTTGGCCAATTTGCGGATGCTACGGAAGTTCAGTATCCGGTCTAATTTCTTCAATGGTACGATTCCGTCTTCTTTGTCCAAATGTGCGTTGCTGCGTTCTCTTTTCTTGCAGTATAATTTGTTTTCCGGTGGCCTTCCCGCCGAGTTTGGGAACTTGACTAATCTACATGTATTAAACGTGGCGGAGAATCGTCTATCCGGTGTCATCTCCAGCGACCTTCCGAGTAGTCTGAAATATCTCGATCTTTCGTCAAATGCCTTCTCTGGTCAGATTCCGAGGAGTGTTGTGAACATGACGCAGCTTCAGGTTGTTAATCTCTCTTTCAATAGGTTTGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTCAACATCTCTGGCTAGACCATAATGTATTAGAAGGGACGTTGCCTTCAGCTCTCGCGAATTGTTCTTCGCTTGTCCATTTGAGTGTTGAGGGAAATGCTCTTCAAGGGGTGATTCCGGCCGCCATTGGAGCTCTCACGAATCTTCAAGTTATTTCACTCTCGCAGAATGGTCTCTCTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTTTCGTCGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGACAGCGACGTGTTTTAGTGCTTTACAGGTCCTCGATATTCAACACAATCAGATAAGGGGAGAGTTCCCCTTGTGGTTAACCGGCGTTTCCACTTTGTCAGTCTTGGATTTTTCTGTCAATCATTTCTCCGGCCAGATTCCGTCTGGGATTGGGAATCTTTCTGGATTACAAGAGCTCAGAATGTCGAATAATTCGTTTCACGGTGAGATTCCTTTAGAAATCAAGAATTGCGCCTCGATATCTGTCATTGATTTTGAAGGGAATCGCTTAACCGGGGAGATTCCGTCGTTTTTGGGCTATATGAGAGGTTTGAAACGGTTGTCTCTCGGTGGAAATCGTTTTTCCGGTACTGTTCCGGCCAGTTTGGGAAACCTTTTGGAGCTTGAAATCTTGAATTTAGAGGACAATGGGTTGAACGGAACCTTTCCGCTGGAGCTAATGGGGCTTGGGAATTTAACAGTAATGGAACTCGGTGGGAACAAATTGTCCGGCGAGGTTCCGACTGGCATTGGCAACCTGAGTCGTCTAGAGATTTTGAATCTCAGTGCTAACAGTCTCTCTGGGATGATTCCGTCCAGCCTTGGCAATCTCTTCAAGCTAACAACTCTCGACTTGAGCAAACAAAATCTTTCTGGGGAGTTGCCATTTGAGCTATCTGGTTTGCCTAATCTGCAGGTAATTGCTCTACAGGAAAACAAATTATCTGGGAATGTTCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCGTTATTTGAATCTAAGTTCTAACAGATTTTCGGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCACTTGTTTCTCTGTCATTATCAGACAATCACATTTCCGGGTTGGTTCCTTCAGACCTTGGTAACTGCTCTGATCTAGAAACTTTGGAGGTCCGTTCAAATGCTCTTTCAGGCCACATTCCGGCGGATCTTTCTCGTTTATCTAATCTGCAAGAGCTCGATTTGGGTAGGAATAATTTGACTGGCGAAATCCCAGAAGAGATCTCAAGTTGCTCGGCTTTAGAATCCCTCCGTCTGAACTCGAATCATCTTTCCGGGCCCATACCAGGGTCGTTGTCAGAGCTCTCAAACTTAACCACGCTGGACCTCTCTTCCAACAATTTGAGTGGTGTTATCCCTGCAAATCTTAGCTCCATTACTGGATTGACGAGCTTAAACGTTTCGAGTAATAACCTAGAAGGCAAAATTCCATCCTTGCTAGGCTCTAGATTCAACAGCTCATCTGTGTTTGCTAATAATTCTGATTTATGTGGGAAACCATTGGCTCGGCATTGTAAAGATACAGATAAAAAAGATAAAATGAAGAGGTTGATTCTCTTCATTGCAGTAGCCGCCAGTGGAGCTGTCCTCTTGACTTTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGAAAGAGGCTCAAAGAGAGAGCATCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCTGGAAGTGGTGGCCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATTACACTAGCGGAAACAATTGAGGCCACGAGACAATTCGATGAAGAGAATGTTCTTAGCAGAACTCGCTATGGATTGGTTTTCAAAGCTTGCTACAATGATGGCATGGTACTCTCAATCCGTCGCCTCTCGAATGGTTCATTAGACGAAAATATGTTCAGAAAAGAAGCTGAAGCATTGGGAAAAATTCGACACCGGAATCTAACTGTTCTTCGTGGCTATTATGCTGGCCCTCCTGATATGCGGCTGTTAGTATACGATTACATGCCTAATGGAAATCTTGCCACTCTCCTTCAAGAAGCATCTCATCAAGATGGTCATGTTCTAAATTGGCCAATGCGGCATCTCATTGCCCTTGGAATCGCCCGTGGCCTGGCCTTTCTTCATTCATCTTCCATTATCCATGGAGATGTCAAGCCACAGAGCGTTCTTTTCGATGCAGATTTTGAAGCTCACTTGTCCGATTTCGGCCTTGACCGACTAACCATTGCAGCCTCCGCGGAAGCATCTACGTCTACTTTGGTGGGCACATTAGGCTACATTGCCCCTGAAGCAGTATTGACTGGGGAAGCCACAAAGGAATCTGATGTCTACAGCTTTGGCATTGTGTTGCTTGAGATTCTAACAGGAAAGAAACCAGTGATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTCTTAGAACCAGGTTTACTTGAGTTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGAGTGAAAGTTGGATTACTTTGCACTGCACCAGATCCTCGTGATCGTCCGACGATGTCCGATATTGTTTTCATGCTCGAAGGTTGCCGAGTTGGACCCGACATCCCTTCCTCCGCCGATCCCACCTCTCAACCATCACCGGCATAA 3396 45.79 MKPLLFFFVFLCGGLFSSSADTGAQTQLEIQALMSFKLNLHDPLGALTAWDSSTPLAPCDWRGVVCTNNRVTELRLPRLQLSGRLTDQLANLRMLRKFSIRSNFFNGTIPSSLSKCALLRSLFLQYNLFSGGLPAEFGNLTNLHVLNVAENRLSGVISSDLPSSLKYLDLSSNAFSGQIPRSVVNMTQLQVVNLSFNRFGGEIPASFGELQELQHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALTNLQVISLSQNGLSGSVPYSMFCNVSSHAPSLRIVQLGFNAFTDIVKPQTATCFSALQVLDIQHNQIRGEFPLWLTGVSTLSVLDFSVNHFSGQIPSGIGNLSGLQELRMSNNSFHGEIPLEIKNCASISVIDFEGNRLTGEIPSFLGYMRGLKRLSLGGNRFSGTVPASLGNLLELEILNLEDNGLNGTFPLELMGLGNLTVMELGGNKLSGEVPTGIGNLSRLEILNLSANSLSGMIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGNVPEGFSSLVGLRYLNLSSNRFSGQIPSNYGFLRSLVSLSLSDNHISGLVPSDLGNCSDLETLEVRSNALSGHIPADLSRLSNLQELDLGRNNLTGEIPEEISSCSALESLRLNSNHLSGPIPGSLSELSNLTTLDLSSNNLSGVIPANLSSITGLTSLNVSSNNLEGKIPSLLGSRFNSSSVFANNSDLCGKPLARHCKDTDKKDKMKRLILFIAVAASGAVLLTLCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAGSGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAEALGKIRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTIAASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA* 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27687678 27691073 + CsaV3_6G046910.1 Csa06g03305 534932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03305 1131 SUPERFAMILY L domain-like 549 733 - -
Csa06g03305 1131 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Csa06g03305 1131 Gene3D Ribonuclease Inhibitor 26 162 IPR032675 -
Csa06g03305 1131 SMART LRR_typ_2 456 479 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 140 164 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 624 648 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 552 574 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 258 282 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 672 696 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 528 551 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 480 503 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 360 384 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 186 209 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 408 432 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 576 599 IPR003591 -
Csa06g03305 1131 SMART LRR_typ_2 210 233 IPR003591 -
Csa06g03305 1131 Gene3D Ribonuclease Inhibitor 456 746 IPR032675 -
Csa06g03305 1131 MobiDBLite consensus disorder prediction 791 818 - -
Csa06g03305 1131 SUPERFAMILY Protein kinase-like (PK-like) 817 1119 IPR011009 -
Csa06g03305 1131 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Csa06g03305 1131 Pfam Leucine rich repeat 526 565 IPR001611 GO:0005515
Csa06g03305 1131 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Csa06g03305 1131 Pfam Leucine rich repeat 650 709 IPR001611 GO:0005515
Csa06g03305 1131 Gene3D Transferase(Phosphotransferase) domain 1 914 1117 - -
Csa06g03305 1131 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1127 - -
Csa06g03305 1131 SUPERFAMILY L domain-like 29 303 - -
Csa06g03305 1131 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Csa06g03305 1131 ProSiteProfiles Protein kinase domain profile. 838 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03305 1131 Pfam Protein kinase domain 848 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03305 1131 MobiDBLite consensus disorder prediction 796 810 - -
Csa06g03305 1131 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 5 1127 - -
Csa06g03305 1131 Gene3D Ribonuclease Inhibitor 163 250 IPR032675 -
Csa06g03305 1131 Gene3D Ribonuclease Inhibitor 354 452 IPR032675 -
Csa06g03305 1131 Gene3D Ribonuclease Inhibitor 251 353 IPR032675 -
Csa06g03305 1131 SMART LRR_sd22_2 672 701 - -
Csa06g03305 1131 SMART LRR_sd22_2 258 285 - -
Csa06g03305 1131 SMART LRR_sd22_2 456 482 - -
Csa06g03305 1131 SMART LRR_sd22_2 576 594 - -
Csa06g03305 1131 SMART LRR_sd22_2 624 647 - -
Csa06g03305 1131 Gene3D Phosphorylase Kinase; domain 1 812 913 - -
Csa06g03305 1131 PRINTS Leucine-rich repeat signature 483 496 - -
Csa06g03305 1131 PRINTS Leucine-rich repeat signature 672 685 - -
Csa06g03305 1131 SUPERFAMILY RNI-like 251 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03045 Csa-Chr1:26523618 Csa06g03305 Csa-Chr6:27687678 1.64E-87 dispersed
Csa06g00234 Csa-Chr6:1602954 Csa06g03305 Csa-Chr6:27687678 3.09E-18 dispersed
Csa06g03305 Csa-Chr6:27687678 Csa06g03768 Csa-Chr6:29987631 3.06E-165 dispersed
Csa01g03348 Csa-Chr1:30062867 Csa06g03305 Csa-Chr6:27687678 3.57E-34 transposed
Csa02g00100 Csa-Chr2:687500 Csa06g03305 Csa-Chr6:27687678 9.56E-07 transposed
Csa02g02604 Csa-Chr2:22651645 Csa06g03305 Csa-Chr6:27687678 2.30E-20 transposed
Csa06g00448 Csa-Chr6:3835957 Csa06g03305 Csa-Chr6:27687678 1.05E-07 transposed
Csa06g03050 Csa-Chr6:26213850 Csa06g03305 Csa-Chr6:27687678 3.69E-09 transposed
Csa04g00527 Csa-Chr4:3473558 Csa06g03305 Csa-Chr6:27687678 2.73E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78426 PF00069 Pkinase 4.60E-35 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03305 - - csv:101203208 2143.24