Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03310 ATGTCATCGACGGGAGAGGCTGCAGAAGTGAAAGTTCCGGCTACGGAGGAGCCGAAGGAGGTAGAGAAGCCGGTGAAGGAGAAGAAACCTAGAGCGACGAGGGAGAAGAAGCCTAGACAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGATGATCAATGAAGCAATCTCGTCACTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCGAAATACATGGAGGAAAAACACAAGGCGGTTCTTCCAGCGAATTTCAGGAAAATCTTGGCTCTTCAATTGAAGAATTCCACAGCTAAAGGAAAATTAACGAAGATCAAGGCGTCGTATAAGCTATCCGAAACAGGAAAGAAAAAAGACATGAACGCAACGAAAGTCGCAAAAGCGAACGCGGAGAAGAAAACAAAACAGGCAAGAACGACGAGAACTACTGGAAGGAAGAGGAAGGCGGTGAAGACGGAGGAGGCGGTGAGTAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGGTCTACCCCGGCGAAGCCGAAACAGCCGAAATCAATTAAGTCTCCTGCAGCGAAGAGGGCTAAAAAAGCGGTTGTGTGA 594 47.81 MSSTGEAAEVKVPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKKPKRSTPAKPKQPKSIKSPAAKRAKKAVV* 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27715754 27717181 - CsaV3_6G046960.1 Csa06g03310 534937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03310 197 MobiDBLite consensus disorder prediction 121 140 - -
Csa06g03310 197 MobiDBLite consensus disorder prediction 164 197 - -
Csa06g03310 197 CDD H15 44 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03310 197 MobiDBLite consensus disorder prediction 1 48 - -
Csa06g03310 197 MobiDBLite consensus disorder prediction 121 197 - -
Csa06g03310 197 MobiDBLite consensus disorder prediction 12 31 - -
Csa06g03310 197 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Csa06g03310 197 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Csa06g03310 197 PRINTS Histone H5 signature 137 151 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Csa06g03310 197 PRINTS Histone H5 signature 170 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Csa06g03310 197 PANTHER HISTONE H1 6 196 - -
Csa06g03310 197 SUPERFAMILY Winged helix DNA-binding domain 44 120 IPR036390 -
Csa06g03310 197 Pfam linker histone H1 and H5 family 46 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03310 197 MobiDBLite consensus disorder prediction 148 163 - -
Csa06g03310 197 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03310 197 PANTHER HISTONE H1 6 196 - -
Csa06g03310 197 Gene3D - 41 124 IPR036388 -
Csa06g03310 197 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03310 K11275 H1_5; histone H1/5 - csv:101205007 261.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00298 Csa-Chr2:2055416 Csa06g03310 Csa-Chr6:27715754 5.93E-23 dispersed
Csa05g02012 Csa-Chr5:23478238 Csa06g03310 Csa-Chr6:27715754 8.25E-06 dispersed
Csa06g02292 Csa-Chr6:20561570 Csa06g03310 Csa-Chr6:27715754 2.58E-20 dispersed
Csa06g03310 Csa-Chr6:27715754 Csa03g04064 Csa-Chr3:35570090 1.58E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012514 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29