Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03326 | ATGGAACAGTGGAAGACCGGAGATTTCTCTCAATCTGTTGTACCAGCTGAGTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCTCAGTCTCTTGCTGTGTCCTCCACTCGTCACCTTAGCAACCAGCTTACTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAAGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTCGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAGCTCTATCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGACATTGAAAATCTAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCGGTTGTCATGGGGCCCCCGTATTCCTACCCAGTTCCTGTTCCTGTTCCCCCTGGACCGATTCCCATGCATCCATCATTGCAGCCCTTCACCTTCTTCGGAAATCAGAATCCCGGCGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATGGATCAGCCATCTGCCCAATATGCTTCCAACTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGTGGAAAGGTGTGATGAATCTACTGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACAATGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAATCGCAAAGGAAAGAAAAAAGTGCTACAGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCTTCTAACAGCGTTGGCGACATCCCAAAACAAAACAACTGA | 1011 | 44.21 | MEQWKTGDFSQSVVPAELVPSSSLQPQPQSLAVSSTRHLSNQLTESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPMDQPSAQYASNSHISSKQDSRSKSSDQHRRSNVERCDESTDVATDLELKMPGSSTMQDASSGSKKGKQSQRKEKSATDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN* | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27815147 | 27818761 | - | CsaV3_6G047120.1 | Csa06g03326 | 534953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03326 | 336 | MobiDBLite | consensus disorder prediction | 248 | 273 | - | - | |
Csa06g03326 | 336 | CDD | bHLH_AtILR3_like | 65 | 139 | - | - | |
Csa06g03326 | 336 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 33 | 335 | IPR044579 | GO:0003700|GO:0055072 | |
Csa06g03326 | 336 | PANTHER | TRANSCRIPTION FACTOR BHLH11 | 33 | 335 | - | - | |
Csa06g03326 | 336 | MobiDBLite | consensus disorder prediction | 279 | 293 | - | - | |
Csa06g03326 | 336 | Coils | Coil | 100 | 155 | - | - | |
Csa06g03326 | 336 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 60 | 110 | IPR011598 | GO:0046983 | |
Csa06g03326 | 336 | Gene3D | - | 59 | 143 | IPR036638 | GO:0046983 | |
Csa06g03326 | 336 | SMART | finulus | 66 | 116 | IPR011598 | GO:0046983 | |
Csa06g03326 | 336 | MobiDBLite | consensus disorder prediction | 308 | 336 | - | - | |
Csa06g03326 | 336 | MobiDBLite | consensus disorder prediction | 230 | 336 | - | - | |
Csa06g03326 | 336 | MobiDBLite | consensus disorder prediction | 230 | 247 | - | - | |
Csa06g03326 | 336 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 61 | 130 | IPR036638 | GO:0046983 | |
Csa06g03326 | 336 | Pfam | Helix-loop-helix DNA-binding domain | 61 | 110 | IPR011598 | GO:0046983 | |
Csa06g03326 | 336 | MobiDBLite | consensus disorder prediction | 17 | 45 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02287 | Csa-Chr3:20405212 | Csa06g03326 | Csa-Chr6:27815147 | 2.46E-24 | dispersed | |
Csa03g02292 | Csa-Chr3:20455891 | Csa06g03326 | Csa-Chr6:27815147 | 9.80E-06 | dispersed | |
Csa01g00226 | Csa-Chr1:1450554 | Csa06g03326 | Csa-Chr6:27815147 | 3.73E-21 | transposed | |
Csa01g01130 | Csa-Chr1:6972358 | Csa06g03326 | Csa-Chr6:27815147 | 1.79E-14 | transposed | |
Csa02g02706 | Csa-Chr2:23586273 | Csa06g03326 | Csa-Chr6:27815147 | 2.33E-20 | transposed | |
Csa02g01354 | Csa-Chr2:13017831 | Csa06g03326 | Csa-Chr6:27815147 | 6.24E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32172 | PF00010 | HLH | 6.50E-09 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03326 | - | - | csv:101222613 | 580.867 |