Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03326 ATGGAACAGTGGAAGACCGGAGATTTCTCTCAATCTGTTGTACCAGCTGAGTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCTCAGTCTCTTGCTGTGTCCTCCACTCGTCACCTTAGCAACCAGCTTACTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAAGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTCGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAGCTCTATCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGACATTGAAAATCTAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCGGTTGTCATGGGGCCCCCGTATTCCTACCCAGTTCCTGTTCCTGTTCCCCCTGGACCGATTCCCATGCATCCATCATTGCAGCCCTTCACCTTCTTCGGAAATCAGAATCCCGGCGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATGGATCAGCCATCTGCCCAATATGCTTCCAACTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGTGGAAAGGTGTGATGAATCTACTGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACAATGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAATCGCAAAGGAAAGAAAAAAGTGCTACAGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCTTCTAACAGCGTTGGCGACATCCCAAAACAAAACAACTGA 1011 44.21 MEQWKTGDFSQSVVPAELVPSSSLQPQPQSLAVSSTRHLSNQLTESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPMDQPSAQYASNSHISSKQDSRSKSSDQHRRSNVERCDESTDVATDLELKMPGSSTMQDASSGSKKGKQSQRKEKSATDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27815147 27818761 - CsaV3_6G047120.1 Csa06g03326 534953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03326 336 MobiDBLite consensus disorder prediction 248 273 - -
Csa06g03326 336 CDD bHLH_AtILR3_like 65 139 - -
Csa06g03326 336 PANTHER TRANSCRIPTION FACTOR BHLH121 33 335 IPR044579 GO:0003700|GO:0055072
Csa06g03326 336 PANTHER TRANSCRIPTION FACTOR BHLH11 33 335 - -
Csa06g03326 336 MobiDBLite consensus disorder prediction 279 293 - -
Csa06g03326 336 Coils Coil 100 155 - -
Csa06g03326 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 110 IPR011598 GO:0046983
Csa06g03326 336 Gene3D - 59 143 IPR036638 GO:0046983
Csa06g03326 336 SMART finulus 66 116 IPR011598 GO:0046983
Csa06g03326 336 MobiDBLite consensus disorder prediction 308 336 - -
Csa06g03326 336 MobiDBLite consensus disorder prediction 230 336 - -
Csa06g03326 336 MobiDBLite consensus disorder prediction 230 247 - -
Csa06g03326 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 130 IPR036638 GO:0046983
Csa06g03326 336 Pfam Helix-loop-helix DNA-binding domain 61 110 IPR011598 GO:0046983
Csa06g03326 336 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02287 Csa-Chr3:20405212 Csa06g03326 Csa-Chr6:27815147 2.46E-24 dispersed
Csa03g02292 Csa-Chr3:20455891 Csa06g03326 Csa-Chr6:27815147 9.80E-06 dispersed
Csa01g00226 Csa-Chr1:1450554 Csa06g03326 Csa-Chr6:27815147 3.73E-21 transposed
Csa01g01130 Csa-Chr1:6972358 Csa06g03326 Csa-Chr6:27815147 1.79E-14 transposed
Csa02g02706 Csa-Chr2:23586273 Csa06g03326 Csa-Chr6:27815147 2.33E-20 transposed
Csa02g01354 Csa-Chr2:13017831 Csa06g03326 Csa-Chr6:27815147 6.24E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32172 PF00010 HLH 6.50E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03326 - - csv:101222613 580.867