Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03327 ATGAAGATAGTAACTTACAACGTGAATGGTCTAAGGCCACGCATCACACAGTTTGGTTCACTTGCTAAACTGCTCGATTCCTTTGATGCCGATATCATTTGCATTCAGGAAACGAAATTAAGAAGGCAGGAATTGCGAGCGGATTTAGTCATTGCTGATGGTTACGAAACATTCGTTTCTTGCACTCGTACCTCTGAGAAAGGTCGAACCGGTTACTCAGGGGTTGCTACGTTTTGCCGTGTTAAGTCAGCATTTTCGAGTAATGAAGTAGCATTGCCAGTTCGTGCGGAGGAGGGTTTCACAGGTCTTCTAGAAAGTTCACAGGATGGAAAACGCACAATGGCTGCAGTTGCAGAAGGACTTGAGGAATTTTCGAAAGAGGAGCTCCTTAAATTAGACAGCGAGGGGCGTTGTATAGTCACAGATCATGGCCATTTTGTTCTCTTCAACATTTATGGGCCTCGAGCTGATAGTGATGATTCCGACAGGGTTCTGTTCAAGTTAAACTTTTACAATGTGCTACAGAAAAGATGGGAGCATCTTCTGCATATGGGAAAAAGGGTATTTGTCGTTGGTGATCTTAATATTGCACCTACTTCAATGGATCGCTGTGACGCAGGACCAGATTTTGAGAATAACGAGTTTCGGAGATGGCTGAGATCTTTGATGGTGGCATGTGGTGGCCGTTTCATTGACATTTTCAGAGCAAAACATCCTGACCGAAGAGATGCATATACATGCTGGCCTCAAAGTACAGGTGCGGAAGTATTCAATTATGGGACAAGGATCGACCATATATTGTGTGCAGGACCATGCTTACATCATGACAACAACCTGCCGGGCCATAATATTGTAGCTTGTCATGTTATGGAATGTGACATTCTGTCACAGTACAAACGCTGGAAAGATGGCAATTCTTATAGGTGGAAGGAAGAGCGGACTGTTAAACTAGAAGGCTCTGATCATGCACCGGTTTGTGCAAGTCTACTGGAAATCCCTGATACTCCTCAACATAGTACTCCATCTTTATCTGCAAGATACAATCCCAAGATTCACGGGCTTCAGCAAACTCTTGTGTCGATGCTTTTAAAAAGACAAGCTGCTGAAGATTCAGCACCGTGCAAAAAATCAAATTCATCTTCACTTGGGAATTTAGGGAATTGTTCTCAAGGATTTAATGGATCATTTGACAATGGTGACCAATCGGGCGATCTTCCAAGTGAATCTTGTTCTTTGACAAACCTAGAAACAGAAGATTCTCTATTAGAAACAGGTGAGTGTTCTGGTGGAAGTTATGCCAAGGAGGCTGCATGCAAAACCTTAACTACGCACGAACCTCTACATGCGAAAGCATTACCTGAGAATCCAACTCGGAAAAGAGTTAGAAGGTGTTCCCAGATGTCATTAAAGGCATTCTTCCAGAAAAATTCAGTTGTTAGCAACGATGCTGACAGCTCTAATGCAGATTCTTCAATCAGCAAAGGAGATACCTCCGAGTCTAATTCTATTGAAATTCCTAGATCAAATACTCAAATCAGCGACTCAGGCCGACAGTTAGAAGCATATCAGGGTCAGTCTCAAATTAATGCCACTCCTGAGAAAGAAAAGAGTGGTGTTGCCATGTTGGAATGGCGGAGGATACAGCAGGTTATGCAGAATAGCATACCCCTTTGCAAGGGCCATAAGGAGACTTGTGTTGCTCGAGTAGTTAAGAAACAAGGTCCTAATAATGGCCGCAGATTTTATGTTTGTGCTCGTGCGGAGGGTCCCGCATCTAATCCTGAAGCAAATTGTGGTTACTTTAAATGGGCGGCTTCCAAATCTCGGCATAAATAA 1836 43.25 MKIVTYNVNGLRPRITQFGSLAKLLDSFDADIICIQETKLRRQELRADLVIADGYETFVSCTRTSEKGRTGYSGVATFCRVKSAFSSNEVALPVRAEEGFTGLLESSQDGKRTMAAVAEGLEEFSKEELLKLDSEGRCIVTDHGHFVLFNIYGPRADSDDSDRVLFKLNFYNVLQKRWEHLLHMGKRVFVVGDLNIAPTSMDRCDAGPDFENNEFRRWLRSLMVACGGRFIDIFRAKHPDRRDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHHDNNLPGHNIVACHVMECDILSQYKRWKDGNSYRWKEERTVKLEGSDHAPVCASLLEIPDTPQHSTPSLSARYNPKIHGLQQTLVSMLLKRQAAEDSAPCKKSNSSSLGNLGNCSQGFNGSFDNGDQSGDLPSESCSLTNLETEDSLLETGECSGGSYAKEAACKTLTTHEPLHAKALPENPTRKRVRRCSQMSLKAFFQKNSVVSNDADSSNADSSISKGDTSESNSIEIPRSNTQISDSGRQLEAYQGQSQINATPEKEKSGVAMLEWRRIQQVMQNSIPLCKGHKETCVARVVKKQGPNNGRRFYVCARAEGPASNPEANCGYFKWAASKSRHK* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27819289 27824769 + CsaV3_6G047130.1 Csa06g03327 534954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03327 611 Pfam GRF zinc finger 556 605 IPR010666 GO:0008270
Csa06g03327 611 Pfam Endonuclease/Exonuclease/phosphatase family 4 269 IPR005135 GO:0003824
Csa06g03327 611 ProSitePatterns AP endonucleases family 1 signature 1. 30 39 IPR020847 GO:0003677|GO:0004519|GO:0006281
Csa06g03327 611 SUPERFAMILY DNase I-like 1 329 IPR036691 -
Csa06g03327 611 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2 1 601 - -
Csa06g03327 611 PANTHER AP ENDONUCLEASE 1 601 IPR004808 GO:0004518|GO:0006281
Csa06g03327 611 MobiDBLite consensus disorder prediction 480 515 - -
Csa06g03327 611 ProSiteProfiles AP endonucleases family 1 profile. 1 331 IPR004808 GO:0004518|GO:0006281
Csa06g03327 611 Gene3D Endonuclease/exonuclease/phosphatase 1 330 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03327 K10772 APEX2; AP endonuclease 2 [EC:4.2.99.18] - csv:101222374 1209.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03788 Csa-Chr3:33521152 Csa06g03327 Csa-Chr6:27819289 9.26E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1116 . . . . . . . Bma15g00943 . . . . . . . Cpe19g00861 . . . . . . . . Cla01g01981 Cam01g2075 Cec04g1734 Cco04g1799 Clacu01g2096 Cmu01g1972 Cre04g1647 . . . . . . . Cme08g00929 . . . . Bpe10g00156 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03327 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011738 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30