Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03333 ATGGCTTCCATTCATTTCTTCTTCTTATCATTCTCTCTCTTCTTCCACTCTCTCTCTCATTCTGCAACCATCACACTCCAAAACAACTGCACTCACACCATTTGGCCTGCCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACTGGCTTCTCCCTCCTCCCCTCTGCCTCCTCCCTCCTCTCCGTCCCCACCTCTTGGTCCGGCCGCATTTGGGCTCGAACCTACTGCTCCACCGATCCCTCCTCCGGCCGCTTCTCCTGCGCGACCGCCGACTGCGGCTCCGGCTCCGTAGAATGCGGTGGGGCCTGCGCTGCCCCACCCGCCACACTCGCCGAATTCACCCTTAACGGAGGGGGCGGCTTCGATTTCTACGACGTCAGCCTCGTCGACGGGTTCAACATCGCGATGCAGATTGTAGCGGTGGGTGGAAAATCCGGCAACTGTACGACGACGGGTTGCATTGAGGATTTGAACGGAGAATGTCCGGGGGAGCTGCGGGTGGTGATGAGTGGGGGGAACCGGAGCGTGGCGTGTAAAAGCGGGTGTGTGGCGTTTGGGAAAGCGGAATATTGTTGCAGTGGGGTTTATGCAAATCCGAACACATGTAAGCCCAGTAATTACTCCAAATATTTCAAGAACAACTGCCCGTTGGCTTACAGTTACGCTTTTGATGACGGTACCAGCACTTTCACATGCGTCTCAGCTAATTATGTCATTACTTTTTGCCCTTCCTCTTTCCCAAGTTTGAAGGAATCTAGTGAACCACAACCACAAGCGGCTAACATTTCAGGTTGCCGGCGTCGCATTGCTACGTCGTCCTTAGCTATTTTCACCGCGGTGTGGGCGGCCGTGGCATCTTTTTCTTCTCTGCCAAAATTATCATTGAATATTTAA 900 54.11 MASIHFFFLSFSLFFHSLSHSATITLQNNCTHTIWPAILSGAGTAPLSTTGFSLLPSASSLLSVPTSWSGRIWARTYCSTDPSSGRFSCATADCGSGSVECGGACAAPPATLAEFTLNGGGGFDFYDVSLVDGFNIAMQIVAVGGKSGNCTTTGCIEDLNGECPGELRVVMSGGNRSVACKSGCVAFGKAEYCCSGVYANPNTCKPSNYSKYFKNNCPLAYSYAFDDGTSTFTCVSANYVITFCPSSFPSLKESSEPQPQAANISGCRRRIATSSLAIFTAVWAAVASFSSLPKLSLNI* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27851431 27853127 + CsaV3_6G047190.1 Csa06g03333 534960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03333 299 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Csa06g03333 299 ProSiteProfiles Thaumatin family profile. 21 245 IPR001938 -
Csa06g03333 299 Pfam Thaumatin family 28 245 IPR001938 -
Csa06g03333 299 SUPERFAMILY Osmotin, thaumatin-like protein 22 246 IPR037176 -
Csa06g03333 299 SMART tha2 24 245 IPR001938 -
Csa06g03333 299 PIRSF PR5 1 290 IPR001938 -
Csa06g03333 299 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Csa06g03333 299 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Csa06g03333 299 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Csa06g03333 299 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Csa06g03333 299 Gene3D Thaumatin 22 245 IPR037176 -
Csa06g03333 299 PANTHER OS03G0233200 PROTEIN 18 259 IPR001938 -
Csa06g03333 299 PANTHER - 18 259 - -
Csa06g03333 299 CDD TLP-PA 23 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03333 - - - csv:101222533 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00099 Csa-Chr3:781308 Csa06g03333 Csa-Chr6:27851431 1.78E-80 dispersed
Csa06g03333 Csa-Chr6:27851431 Csa02g02142 Csa-Chr2:19383919 2.55E-85 dispersed
Csa06g03333 Csa-Chr6:27851431 Csa06g03334 Csa-Chr6:27860378 7.12E-83 tandem
Csa02g02140 Csa-Chr2:19375453 Csa06g03333 Csa-Chr6:27851431 1.15E-93 wgd
Csa02g01372 Csa-Chr2:13179658 Csa06g03333 Csa-Chr6:27851431 6.70E-97 wgd
Csa03g04288 Csa-Chr3:37543700 Csa06g03333 Csa-Chr6:27851431 3.91E-91 wgd
Csa03g00074 Csa-Chr3:606537 Csa06g03333 Csa-Chr6:27851431 9.85E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160