Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03345 ATGCTACAAGACATGTGGAACGCTCCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCTTCTTCTCCGGCCAAGCCTCTTGCCGTCTCCCGGCTCCGTCCCGATCCATACCATGTCACTCACAAGGTTCCAGTTGGGGATACACCCTACGTTAGGGCAAAAAATGTTCAGTTGGTGGCTAAGGATCCGGATAAGGCGATTCCTCTGTTTTGGGCTGCCATTAACGCAGGGGACAGAGTTGATAGTGCGTTGAAAGATATGGCTATTGTGATGAAGCAGCAGAATCGAGCGGAAGAAGCGATTGAAGCGATTAAATCATTGCGAAATCGGTGTTCAGATCAGGCGCAGGAGTCTCTGGATAACATTCTTCTCGATCTATACAAGAGATGTGGAAGATTAGATGACCAGATAGCTCTTTTGAAGCATAAACTGTTCTTGATTCAACAAGGTTTAGCGTTTAATGGTAAACGGACCAAAACCGCGCGATCTCAAGGAAAGAAGTTTCAAGTTTCTGTAGAGCAAGAAGCAACTAGATTACTGGGGAATTTGGGATGGGCACTGATGCAACAAAACAACTATGTTGAAGCAGAAGATGCTTATAGAAAAGCACTTACAATTGCTCCAGATAACAACAAAATGTGCAACCTTGGAATCTGTTTGATGAAACAAGGTAGAATTTCTGAGGCAAAAGAGAATCTAAGAAGAGTTAAACCAGCAGTTATAGATGGGCCAAGAGGCACAGATTCCCATCTCAAAGCTTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAGTCAGAAATGATGAATAGAGGAGGTGACAGGCTTGAACAAAGGCGGCTATTCGACACCTTTCTCGGTTCTTCGTCGATTTGGCAGCCTCAGCCTTGCAAGGATCACACAACAACCACTTTACCAACATTACCTGTCACAAATCCTGTTAGGACAATTCAAGATGATTTTGGTGACGAGAATATTGATACCAACTCGTTAACAAACCAAATGGTTGCTCCTCCTCAACAACATAAGTTTATCAAACAAGTTCAAGTTCCTTTAGGGAACTCATTGAATGTTGCTGCACAACCATTTTTTCTATCAAAATTTGTAAGTGAACCTATTAGTAAAGTCCCATTGGGAAACCAATTTCCTGAAGGTCTGAAGAGAACAAGGTCTGGAAATGCAGCCAACTCAATGAGAGTAAACGATTTGGTGGAAATAAAAAGGCCATTTTTAGCAGAGTTAGGAAAGACCGAAACTAAGACAAGAAAGCCATTTTCTACCTCAGAAGAGACAGATAAATGGGCAGAAATATTGCCTGATGACAATGATTTTGAAGAAGCTATTCTTGCTGCAGTTCTGGGATCATCGGATGATGAAGCAGAGAAGAAAACAACAGCCAATGCAGGTGCCGGTGGCGGAGGTGGCGGCGGTGTAATTCAGAGAAAAATTGAGAAAAGGCTCAAGGTTTTTGAAGACATTACACTTTCCTTGAGCCCCAGAGCCTAA 1503 43.25 MLQDMWNAPPGFRPSKSAPSSPAKPLAVSRLRPDPYHVTHKVPVGDTPYVRAKNVQLVAKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYVEAEDAYRKALTIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVIDGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQRRLFDTFLGSSSIWQPQPCKDHTTTTLPTLPVTNPVRTIQDDFGDENIDTNSLTNQMVAPPQQHKFIKQVQVPLGNSLNVAAQPFFLSKFVSEPISKVPLGNQFPEGLKRTRSGNAANSMRVNDLVEIKRPFLAELGKTETKTRKPFSTSEETDKWAEILPDDNDFEEAILAAVLGSSDDEAEKKTTANAGAGGGGGGGVIQRKIEKRLKVFEDITLSLSPRA* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27921892 27924924 + CsaV3_6G047310.1 Csa06g03345 534972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03345 500 Coils Coil 246 266 - -
Csa06g03345 500 SMART tpr_5 176 209 IPR019734 GO:0005515
Csa06g03345 500 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 497 IPR044961 -
Csa06g03345 500 Gene3D Tetratricopeptide repeat domain 54 238 IPR011990 GO:0005515
Csa06g03345 500 SUPERFAMILY TPR-like 52 234 IPR011990 GO:0005515
Csa06g03345 500 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Csa06g03345 500 MobiDBLite consensus disorder prediction 456 476 - -
Csa06g03345 500 Coils Coil 89 116 - -
Csa06g03345 500 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 497 - -
Csa06g03345 500 MobiDBLite consensus disorder prediction 1 29 - -
Csa06g03345 500 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03345 - - - csv:101220568 951.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02612 Csa-Chr1:23105736 Csa06g03345 Csa-Chr6:27921892 1.69E-86 dispersed
Csa01g02614 Csa-Chr1:23131941 Csa06g03345 Csa-Chr6:27921892 9.14E-88 dispersed
Csa03g02676 Csa-Chr3:25451659 Csa06g03345 Csa-Chr6:27921892 1.55E-95 dispersed
Csa06g03345 Csa-Chr6:27921892 Csa03g01117 Csa-Chr3:8819026 1.13E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1142 . . . Bda10g00191 . . . . . . . Cma07g00415 . Car07g00364 Sed14g1204 . Cpe10g00675 Bhi03g00842 Tan03g2099 Cmetu04g2642 . Hepe04g1607 . . . . . . . . . . . . Cone9ag1616 . . . Cme08g00947 . . . . Bpe10g00163 . . . . . Cmo07g00412 . . . . . . . . . . . . . . . . . . . . . Csa06g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38