Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03363 ATGTTATCCAGTTCGATGAACTTTCTGAGGGCTTGTTGGATGCCGTCCTCGGACAATATAGTACACAGGGGTTCGAATTCAGCAGGCCGTCATGAAGGCTTACTATGGTACAAGGATATTGGACAACACATGAATGGTGAATTTTCTATGGCTGTAGTTCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATTGAATCGGGTTCATTGAGTTTCCTTGACTCCGGACCATATGGAACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGATAATCTTTTCCAACATCTAAAAAGGTTCACCTCAGAACAGCAGTCAATGTCCACTGATGTAATAAAAAAAGCATTTCAGGCTACAGAGGAAGGGTTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGTGTGATTTGTGATGGCACCCTTTACATAGCTAACCTTGGTGATTCCCGTGCGGTGCTCGGAAGGCTCATGCGGTCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTGAGCATAGAGTCAGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGATTCACATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTATTACAGGTTTCCAGATCTATTGGTGACGTGTATCTAAAGAAGCCGGAATTCAACAGGGAACCTTTGTATTCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCATTATTGAGCTGTGAACCATCAATTGCAGTCTATGAGCTTCAACCACATGATCAGTTTATCATATTTGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAAGCTGTAGATCTGATTCGAAGTCACCCACATAATGGAAGTGCCAAAAGGCTGGTAAAAGTTGCTATGCTAGAAGCAGCTAAAAAACGAGAAATGCGATATTCAGACTTGAAGGATATTGATCGTGGAATACGTCGCCATTTTCATGATGACATCACTGTCATAGTTGTATTTCTCGACTCTAATCTTGTAAGCAGAGCGAGCTCGGTCCGTGGTCCAACAACGTCTTTGAGAGGATGTGGTGTTATCTTACCTACAAAATCTCTAGCTCGTTGCACCACACCTACAGAACTTAACACAATCTCATGA 1197 43.44 MLSSSMNFLRACWMPSSDNIVHRGSNSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSFLDSGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSTDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICDGTLYIANLGDSRAVLGRLMRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLLQVSRSIGDVYLKKPEFNREPLYSKFRLREPFTRPLLSCEPSIAVYELQPHDQFIIFASDGLWEHISNQQAVDLIRSHPHNGSAKRLVKVAMLEAAKKREMRYSDLKDIDRGIRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGCGVILPTKSLARCTTPTELNTIS* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28014814 28019440 + CsaV3_6G047490.1 Csa06g03363 534990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03363 398 Pfam Protein phosphatase 2C 80 325 IPR001932 -
Csa06g03363 398 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Csa06g03363 398 Gene3D - 37 365 IPR036457 -
Csa06g03363 398 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Csa06g03363 398 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 386 - -
Csa06g03363 398 SMART PP2C_4 41 353 IPR001932 -
Csa06g03363 398 CDD PP2Cc 48 355 IPR001932 -
Csa06g03363 398 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Csa06g03363 398 PANTHER ALPHABET, ISOFORM E-RELATED 6 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03224 Csa-Chr3:29655759 Csa06g03363 Csa-Chr6:28014814 3.61E-180 dispersed
Csa04g01492 Csa-Chr4:14662814 Csa06g03363 Csa-Chr6:28014814 5.67E-38 dispersed
Csa05g00646 Csa-Chr5:4308076 Csa06g03363 Csa-Chr6:28014814 0 dispersed
Csa06g01491 Csa-Chr6:12600999 Csa06g03363 Csa-Chr6:28014814 5.98E-39 dispersed
Csa06g01866 Csa-Chr6:16831535 Csa06g03363 Csa-Chr6:28014814 6.67E-147 dispersed
Csa06g03363 Csa-Chr6:28014814 Csa07g00118 Csa-Chr7:1052155 6.36E-145 dispersed
Csa02g01405 Csa-Chr2:13428092 Csa06g03363 Csa-Chr6:28014814 0 wgd
Csa03g00055 Csa-Chr3:498307 Csa06g03363 Csa-Chr6:28014814 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03363 K01102 - csv:101219696 800.431