Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03367 ATGGCGGAAAGTTTAGAAGAGGTCTACCTCCATGGCGATCTCGACCTTAAAATCATTGCCGCCGTTCATTTGCCTAACATGGACATTGTATCTGAGCATCTTCGTCGTTGCTTCACAGCCTGTGGTACTGTTAACTACTCTGCCATTAAATCCGTCGCCACCAAGTCCCGTTCTGCTGACGGTGAGGAGAAAGCCCACCACAGCCGTGGAAAAATTATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCTCGGACTCGGGTCATAAAAAATTCCCAGAATCCCCATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAGATGGCCGAGTTGGAATTTCAGGTGAAAGACGATGATGTCTTTGGGGCTGAAGTTATGGGGACGGTCAAAATCCCTGCTCAGGACATTGCTTCCGGTAAGATAATTAGTGGGTGGTATACGGTGATTGGCTCAAATGGCAAGCCACCGAAGCCCGACACTGCACTTCGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAATCCGATATATCGACATGGCATTGCTGGAGATCCCGAGCATAGGGGCGTGCAGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTACTGCCGCAGATTGAATTGGATGAAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATCGTCGGTTGGTCCGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGTTACCACGAGGTGGAGACTTGACTCTTGGTGAACTCCTGAAATACAAATCAGAAGAGGGTGTCAGAGTTCTGATGATGATTTGGGATGACAAGACTTCTCACGATAAGTTCTTCATCAACACGGAAGGATTGATGCAGACACATGACGAGGAAACCAGAAAATTTTTTAAACATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCGAGCGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGAACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGCGATGGTCGTTATGATACACCTGAGCATCGATTGTTTCATGACCTTGACACAGTATTTAAGGATGATTTTCATAATCCTACAATTCCGCCTGGAGCCAAAGCACCAAGGCAACCATGGCATGATTTGCACTGTAGGCTTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAGAGCTACAAGATGGACAGAGTTTGGACTACGGTGCAGGAGAATTACTCACTGGCATGATGCTTTAATAAAGATAGAGCGTATTTCGTGGATACTAAGCCCTCAAGTAATTCTCTTAGAAGACGGTTCGATAAAAGTTCCAGAAGATGACCCAAAAGTATATGTTTCAAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATATTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCACTGAACCTTGTTTGTGCTAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCGCAGCATTTTATTTATATCGAAAATCAGTACTTTATTGGATCATCATATGGATGGCCAGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCTCTTAAGATTGCGAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATCGTCATACCAATGTGGCCTGAGGGAGATCCAAACAGCGGTCCTATGCAAGAGATCCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAATTGAAGTCATCAGGGCAACCAGATTTGCACCCTCAAGACTTCCTAAATTTTTACTGCCTTGGAAAACGGGAGGAAATTCCTGAGAATGGGCCAACCACTGATGATCCAACGGCATGTAATTCACTAAAAAATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTATTGGGTCTGCAAATATAAACCAAAGATCTATGGCTGGAACAAAGGACACGGAGATAGCCACAGGCGCATATCAGCCGCATCATACTTGGGTGAAGAAAAAGAAGCACCCACACGGTCAGATTTATGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTAAATCCATGTTTTGAGGAGCCAGAAAATTTGGACTGTGTCAGAAAAATCAATGGGATTGCTGAGGATAACTGGAACAGATTCGCAGACAATGAATTCCGGACATTGCAAGGCCACCTTCTCAGGTATCCGGTGCTCGTGGACAATGATGGGAAAATCAACCCTCTGCCGGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGTTCTCATTCAGCTGCAATTCCTGATGTTTTGACCACATAG 2574 44.09 MAESLEEVYLHGDLDLKIIAAVHLPNMDIVSEHLRRCFTACGTVNYSAIKSVATKSRSADGEEKAHHSRGKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQDIASGKIISGWYTVIGSNGKPPKPDTALRIEMKFTSVEENPIYRHGIAGDPEHRGVQHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDEGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLMMIWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGAKAPRQPWHDLHCRLDGPAAYDLLINFEQRWNRATRWTEFGLRCRRITHWHDALIKIERISWILSPQVILLEDGSIKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESLNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSGQPDLHPQDFLNFYCLGKREEIPENGPTTDDPTACNSLKNRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWVKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPENLDCVRKINGIAEDNWNRFADNEFRTLQGHLLRYPVLVDNDGKINPLPGHENFPDVGGKIIGSHSAAIPDVLTT* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28038914 28045891 + CsaV3_6G047530.1 Csa06g03367 534994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03367 857 Pfam Phospholipase D C terminal 778 846 IPR024632 -
Csa06g03367 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Csa06g03367 857 Gene3D C2 domain 11 183 IPR035892 -
Csa06g03367 857 SMART C2_3c 13 151 IPR000008 -
Csa06g03367 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa06g03367 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Csa06g03367 857 PANTHER PHOSPHOLIPASE D 5 857 IPR015679 -
Csa06g03367 857 SMART pld_4 702 729 IPR001736 GO:0003824
Csa06g03367 857 SMART pld_4 357 392 IPR001736 GO:0003824
Csa06g03367 857 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Csa06g03367 857 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Csa06g03367 857 Pfam C2 domain 12 153 IPR000008 -
Csa06g03367 857 Gene3D Endonuclease Chain A 226 465 - -
Csa06g03367 857 PANTHER PHOSPHOLIPASE D DELTA 5 857 - -
Csa06g03367 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Csa06g03367 857 SUPERFAMILY Phospholipase D/nuclease 554 783 - -
Csa06g03367 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Csa06g03367 857 SUPERFAMILY Phospholipase D/nuclease 198 461 - -
Csa06g03367 857 Gene3D Endonuclease Chain A 529 748 - -
Csa06g03367 857 CDD C2_plant_PLD 8 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01727 Csa-Chr2:16957629 Csa06g03367 Csa-Chr6:28038914 0 dispersed
Csa06g00598 Csa-Chr6:5064048 Csa06g03367 Csa-Chr6:28038914 0 dispersed
Csa06g01777 Csa-Chr6:15623047 Csa06g03367 Csa-Chr6:28038914 6.05E-20 dispersed
Csa06g03367 Csa-Chr6:28038914 Csa07g02159 Csa-Chr7:20516256 0 dispersed
Csa06g03367 Csa-Chr6:28038914 Csa02g02386 Csa-Chr2:21161532 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03367 K01115 - csv:101217251 1786.93