Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03370 ATGAGTTCCTGTCCAATTCAAGACTTCAGCTTGCTGCAGCCAGGTTTCGTTGATCCAGAACAAACATCTCCCTTTTGGAATAACAAGGCTGACAATGCATGGCAGCTCACAGCAGCCACCATGGTCGGTCTACAAACCGTTCCCGGGCTGGTCATTCTCTATGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCAGCAGTGCTTGTCTGTTGGGTTTTGTGGGCACATCGTATGGCATTCGGCAAACGATTGTTCGGGATCGTTGGTAAGCCCGGCCTAGCTCTGTCTGAATCCTACCTTCTTTCAAAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTGTTTTTCCAGTTTGCTTTCGCTGCCATTACTGTTGTGTTGCTTGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTTACTCTTTGTTATACTGTGGGGGCATTTTGTATATGGGGAGATGGATTTATTCAAAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTTGCTGGATTCACTGCTGCTTACTGGGTTGGGCCACGGCACTCCCATGACAGGCAGAACTTCCCACCAAACAACATACTGCACATGGTTGGGGGTGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCAGGTCGTATTACATCGCTGGCCATTTTGAACACGCATGTTTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTTTGCATCACTCCTGGGGCAGGGCTCGTGGACACTATTGCAGCTGTGGTGATGGGCGTTCTTGCCGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGGAGATTGGCATTCCTTCAGTGTGTTGATGATACTCTGGGGGTCTTCCACACGCACGCGGTGGCTGGTTCCATGGGCGGACTTCTCACAGGCTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACGGACCAGGCTTCCTGTATGCCATCTCTGATAAAAAGCTCAAAGACGGCCTCAAACAAATCGGCATACAGTTCGCAGGAGCAGTGTTTATTACCCTCTGGAATGCCATATTTACCAGCATTATATGTTACCTGATTAGCCATATTGTTAACTTAAGGATGAACGAAGAGGACCTGGAGATTGGTGATGATGCAGCCCATGGAGAAGAACCCTACGCGTTGTGGGGTGACGGTGAAAAGATGCCATCTTCATTTCGTCTTCCACACACGCCTAGGTTTCCTTCGTTATGCAGGTGGGATTAG 1422 49.09 MSSCPIQDFSLLQPGFVDPEQTSPFWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGKRLFGIVGKPGLALSESYLLSKSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGDGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSHDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTIAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYGPGFLYAISDKKLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMNEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28054966 28056570 - CsaV3_6G047560.1 Csa06g03370 534997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03370 473 Pfam Ammonium Transporter Family 33 445 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa06g03370 473 PANTHER AMMONIUM TRANSPORTER 11 471 - -
Csa06g03370 473 Gene3D Ammonium transporter AmtB like domains 16 448 IPR029020 -
Csa06g03370 473 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa06g03370 473 TIGRFAM amt: ammonium transporter 31 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa06g03370 473 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005887
Csa06g03370 473 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005887
Csa06g03370 473 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005887
Csa06g03370 473 PRINTS Rhesus blood group protein signature 308 326 IPR002229 GO:0005887
Csa06g03370 473 PANTHER AMMONIUM TRANSPORTER MEP2 11 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa06g03370 473 SUPERFAMILY Ammonium transporter 26 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02362 Csa-Chr2:20952657 Csa06g03370 Csa-Chr6:28054966 0 dispersed
Csa03g03043 Csa-Chr3:28760862 Csa06g03370 Csa-Chr6:28054966 1.13E-178 dispersed
Csa06g03370 Csa-Chr6:28054966 Csa03g01153 Csa-Chr3:9037503 8.45E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03370 K03320 - csv:101218977 978.008