Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03395 ATGGCGTTTTCCGATGAGAATAATTCCAACTTTATTAAACCCACTTCTTTTCTTCCAGGAGGAGGGTTGGAGAAGAGTGGGAGGGCTTTTGGGCAGGAGATTAGTAGGGTTAATAGTAATCGGAGAGCTCTTAATGCTATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGGATTCTCAGGAAAGCAAGAGATTTGCGAGAAGAAGCAGGTTGATCCGTTCCATAGACCCATTACAAGGAAATTTGCTGCTCAAATTGCTAGTAGTCAACAGCTTCATCATCATCCTCAGGAAAATAATAAGCCTAACTCTATTCTTACAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGAGGACTGCAAAACACTAGAAAATGACCATCCAGTCCCTATGTTCTTGGAGAAATCAGAACCATCATTGTCTCAGGAAGCAAGCCAAATGGAGGAGGTTGAAATGGAGGATATAGCAGAGGAGGAAGATCCAGTAATCGACATTGACATTATTGATTCCAATAACCCGCTTGCCGTTGTTGAGTACGTGGACGATCTCTACGCTCACTACAGAAAAATTGAGAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAGTTGACATTAATGAGAAGATGAGAGCTATTCTAATTGATTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACAGTGAATCTCATAGACAGATTTTTGGCACAAAAAAGCGTAGTGAGAAAGAAGCTTCAGCTTGTTGGTTTGGTTTCTATGCTGTTAGCTTGCAAATATGAAGAAGTTTCTGTTCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACTGTAATGCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACACCCTTTGTTTTCCTCCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTCAGCTAATGGCATTCTTCTTGATCGAACTCTCGCTCGTCGAGTATGAAATGCTGAGGTTCCCACCCTCTCTGCTAGCAGCAGCGGCAATTTACACAGCTCAATGTACTCTCACCAGAATCGATGGTGGTTGGAGCCGAACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGCATGCTCGAGACTAATGGTGGGGTTCCATCAAAATGCGGCGACCGGGAAGCTCACCGGCGTCCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1338 42.08 MAFSDENNSNFIKPTSFLPGGGLEKSGRAFGQEISRVNSNRRALNAINQNSVVNQAYPCVVNKRGFSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHHPQENNKPNSILTNSNAFGHSIFVDEDCKTLENDHPVPMFLEKSEPSLSQEASQMEEVEMEDIAEEEDPVIDIDIIDSNNPLAVVEYVDDLYAHYRKIENSSCVPPNYMTKQVDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLAQKSVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLQLMAFFLIELSLVEYEMLRFPPSLLAAAAIYTAQCTLTRIDGGWSRTCEWHSSYSEDQLLACSRLMVGFHQNAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28148278 28151077 - CsaV3_6G047810.1 Csa06g03395 535022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03395 445 MobiDBLite consensus disorder prediction 93 112 - -
Csa06g03395 445 Pfam Cyclin, N-terminal domain 192 317 IPR006671 -
Csa06g03395 445 SMART Cyclin_C_2 319 437 IPR004367 -
Csa06g03395 445 ProSitePatterns Cyclins signature. 221 252 IPR006671 -
Csa06g03395 445 Gene3D - 191 432 - -
Csa06g03395 445 PANTHER CYCLINS 30 440 IPR039361 -
Csa06g03395 445 PIRSF Cyclin_A_B_D_E 23 445 IPR039361 -
Csa06g03395 445 SMART cyclin_7 226 310 IPR013763 -
Csa06g03395 445 SMART cyclin_7 323 406 IPR013763 -
Csa06g03395 445 CDD CYCLIN 220 309 IPR013763 -
Csa06g03395 445 PANTHER CYCLIN-B2-1 30 440 - -
Csa06g03395 445 CDD CYCLIN 317 405 IPR013763 -
Csa06g03395 445 Gene3D - 205 317 - -
Csa06g03395 445 SUPERFAMILY Cyclin-like 180 316 IPR036915 -
Csa06g03395 445 SUPERFAMILY Cyclin-like 318 437 IPR036915 -
Csa06g03395 445 Pfam Cyclin, C-terminal domain 319 435 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03395 Csa-Chr6:28148278 Csa07g01213 Csa-Chr7:11916314 3.49E-72 dispersed
Csa04g02698 Csa-Chr4:26118950 Csa06g03395 Csa-Chr6:28148278 4.58E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03395 K21777 - csv:101216622 867.07