Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03401 ATGAAGAATGGTCATCTATCTTGTTTTCCCAATGGAGAGTTATGTCAGCTAAAGAATGGCAAATCTCATCAACCAAGAAACTTGCCTCTACTTGATCAGGATCTTAACTTCCTTCCTTGTTCAGTTTCTGTATCTAAAGAATCTGGGAATCAAATGGAGGAGTCCTGTGCATCAGGTGGGGAATTGATAGGTATTGTAGAAAAGAAAAGGAGGGCAACAAGTGAGCACATTGCTAGAATTACTTTATCCGATCTGGCTAAAAATTTTGGTGTTCCGATCACAGAAGCTTCAAGAAATCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTTGGCATTCACCGCTGGCCACACAGAAAGATAAAGTCTATTGATGGTCTAATTCGAGATCTTCAGGAAGAAGCAAAGCATAGGGAGGAAGATCACAAAGCTTTGATGGCAGTGACCAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGGATAGAGAGGACACCATTTAGGGAGCTGGAGAATGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCTAGAGCTCTAGAAAGTCAGAGTCCATCAGTATAG 606 40.26 MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLPCSVSVSKESGNQMEESCASGGELIGIVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDVFRRKHKARALESQSPSV* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28169355 28170138 + CsaV3_6G047870.1 Csa06g03401 535028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03401 201 PANTHER PROTEIN RKD4 23 197 IPR044607 GO:0003700
Csa06g03401 201 ProSiteProfiles RWP-RK domain profile. 63 147 IPR003035 -
Csa06g03401 201 Pfam RWP-RK domain 80 127 IPR003035 -
Csa06g03401 201 PANTHER PROTEIN RKD5 23 197 - -
Csa06g03401 201 Coils Coil 131 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03401 - - - csv:101215892 390.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03401 Csa-Chr6:28169355 Csa04g00684 Csa-Chr4:4646625 6.43E-06 dispersed
Csa03g01978 Csa-Chr3:15608830 Csa06g03401 Csa-Chr6:28169355 4.10E-21 transposed
Csa04g02567 Csa-Chr4:25256377 Csa06g03401 Csa-Chr6:28169355 3.90E-11 transposed
Csa06g02013 Csa-Chr6:18136074 Csa06g03401 Csa-Chr6:28169355 3.26E-10 transposed
Csa04g02701 Csa-Chr4:26143290 Csa06g03401 Csa-Chr6:28169355 6.45E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1190 . . . . . . . . . . Cma03g00624 . Car03g00579 . . . . . . . . . . . . . . . . . . Cone8ag0893 Cone12ag0864 . . . . . . . . . . . . . . . Cmo03g00652 . . . . . . . . . . . . . . . . . . . . . . Csa06g03401 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013768 0 4 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 2 0 1 1 1 1 1 0 1 1 1 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32174 PF02042 RWP-RK 1.80E-21 No_clan Csa TF