Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03402 ATGAGGATAGTTTGCATTCTAGTATTGATACTTCTCTTCAGTGGGAGTTACTCATTTGGAGACGGCGCAAATGTATCTCCGAGACCTGAAGTTGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATAGGCAAAGTTGGAAAAATTGCTGTAGAAGCTGCCATCGAGGATGTAAATTCTAATCCATCCATTATGGGGGGGACGAAACTGAAGCTCAGTTTACATGATACCAACTACAGTGGATTTTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACCAAGACTATGGCCATAATTGGCCCCCAAAATTCTGTAACTGCTCATGTCATATCTCATATTGCAAATGAGCTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCGCAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTTCCAATGGAAAGAGGTGATTGCTATCTTTGTTGATGACGATCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAGACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCTGATGCTAGTCGAGATGTGGTCACTGATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGAATACTTGTTATTCACACTTATGAGACCACAGGTATGGTTGTGCTCAGTGTGGCTCAATATCTTGGATTGACAGGGCCTGGGTACGTTTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTACTACTTCTATGGAAAATATTCAAGGACTTGTTGCTTTACGTCTTTATACACCAGATTCTGTACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTCACTGATGTAAAGTCATCAAGTGGTTCGCTCGGATTGAGTACTTATGGATTATATGCTTATGATACTGTTTGGATACTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAACACTTTCGAAGTTAACCGGGGTTGATGTTAGAACTTTGAATCTCAACTCTATGAACATCTTCAATGGTGGGAAGACACTACTGGACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGAAAGGGATTTAATTCATCCTGCGTTTGAAGTGATCAATATAATCGGCACAGGGGAAAGAAGAATTGGTTATTGGTCTAACTATTCTGGCCTGTCAATTGTGCCTCCTGAAACACTTTACTCGAAACCACCTAACCGAACCAGTTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGTGGGTGGGCATTTCCAAACACTGGGAGATATTTAAGAATTGGAGTTCCGAGGCGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACGGACATGTTCACAGGCTTCTGCATCGATGTCTTCACTGCAGCAATCAATTTCTTGCCTTATGCAGTCCCCTATAAGTTAATTCCTTTTGGGGATGGCCTTACTAATCCTAGTGGAACTGAACTGATTCGACTAATCACAACTGGCGTCTATGATGGGGCGATAGGGGACATTGCAATCATCACAAACCGAACCAGGATGGCTGATTTTACACAACCATACATAGAGTCTGGCCTAGTAGTTGTAGCCCCAGTGAAGAAGTTGAATTCTAGCGCTTGGGCCTTTTTACGACCGTTCACTGCGAGGATGTGGTGTGCTACCGCTGCTTCTTTCATTGTAATAGGAGCAGTTGTTTGGATTTTGGAACATAGGATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATCACCATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCATCGGCAAAATACAGTCAGTGCCCTCGGTCGCCTCGTGCTGATCATATGGCTATTTGTTGTTCTAATTATCAATTCAAGCTATACTGCAAGTTTGACTTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTGAAGGGGATTGAAACTTTGATTTCGAACAATGAACCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAACGATGGGCCAACAAATAATGGTGTTGCTGCTATTGTCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGTGAATACAGTATTGTTGGCCAAGAGTTCACAAAAAATGGGTGGGGATTTGCTTTCCCTCGCGACTCTCCATTAGCAGTTGACATGTCCACAGCTATTTTAAGACTGTCCGAAACCGGAGATCTTCAAAGAATCCATGACAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCCTCAAAAATTGAGGTGGATCGACTTCAGCTAAATAGCTTTTGGGGACTTTTTCTAATATGTGGAGTAGCTTGTGTGCTCGCTCTATCAATATACCTCTTTCAAATGGTGCGTCAATATAGCGAACATTACACTGAAGAACTCGGGTCTTCTGAGCAACCATCTAGATCTGCAAGCCTACATAGATTCCTTTCTTTTGCAGATGAAAAAGAAGAAGTCTTCAAAAGTCAATCCAAGCGAAGACGAATGCAAGAGGCTTCAGTTAGAAGCGTGAATGAAGAAAATTCAACAGGCAGTTCAAGAAAAAATGGCCATGGTTATGCTGATGGAGTTGATGCATGA 2799 41.66 MRIVCILVLILLFSGSYSFGDGANVSPRPEVVNIGALFSFRSMIGKVGKIAVEAAIEDVNSNPSIMGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWKEVIAIFVDDDHGRNGIAALGDQLNERRCKISLKVPLKPDASRDVVTDALVKVALTESRILVIHTYETTGMVVLSVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPTTSMENIQGLVALRLYTPDSVLKRNFVSRWTNFTDVKSSSGSLGLSTYGLYAYDTVWILAHAINAFLNEGGNLSFSTLSKLTGVDVRTLNLNSMNIFNGGKTLLDKILEVNFTGITGSVEFTPERDLIHPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNTGRYLRIGVPRRVSYQEFVSQVEGTDMFTGFCIDVFTAAINFLPYAVPYKLIPFGDGLTNPSGTELIRLITTGVYDGAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTARMWCATAASFIVIGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRQNTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNEPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPTNNGVAAIVDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDMSTAILRLSETGDLQRIHDKWLMKSACTSQASKIEVDRLQLNSFWGLFLICGVACVLALSIYLFQMVRQYSEHYTEELGSSEQPSRSASLHRFLSFADEKEEVFKSQSKRRRMQEASVRSVNEENSTGSSRKNGHGYADGVDA* 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28181168 28185626 + CsaV3_6G047880.1 Csa06g03402 535029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03402 932 Pfam Bacterial extracellular solute-binding proteins, family 3 492 811 IPR001638 -
Csa06g03402 932 CDD GluR_Plant 471 811 - -
Csa06g03402 932 Gene3D - 50 399 - -
Csa06g03402 932 Gene3D - 742 776 - -
Csa06g03402 932 Gene3D - 147 424 - -
Csa06g03402 932 MobiDBLite consensus disorder prediction 908 922 - -
Csa06g03402 932 PANTHER GLUTAMATE RECEPTOR 3.6 13 922 - -
Csa06g03402 932 SUPERFAMILY Periplasmic binding protein-like I 27 462 IPR028082 -
Csa06g03402 932 PIRSF IGluLR_plant 1 928 IPR017103 -
Csa06g03402 932 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Csa06g03402 932 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Csa06g03402 932 MobiDBLite consensus disorder prediction 894 932 - -
Csa06g03402 932 Pfam Receptor family ligand binding region 50 408 IPR001828 -
Csa06g03402 932 Gene3D - 777 810 - -
Csa06g03402 932 Gene3D - 582 708 - -
Csa06g03402 932 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Csa06g03402 932 Pfam Ligand-gated ion channel 812 844 IPR001320 GO:0015276|GO:0016020
Csa06g03402 932 Gene3D - 464 581 - -
Csa06g03402 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Csa06g03402 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Csa06g03402 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Csa06g03402 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 922 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02681 Csa-Chr2:23361035 Csa06g03402 Csa-Chr6:28181168 0 dispersed
Csa02g02683 Csa-Chr2:23375718 Csa06g03402 Csa-Chr6:28181168 1.49E-160 dispersed
Csa02g02684 Csa-Chr2:23395424 Csa06g03402 Csa-Chr6:28181168 0 dispersed
Csa06g03402 Csa-Chr6:28181168 Csa07g00367 Csa-Chr7:2736621 0 dispersed
Csa06g01991 Csa-Chr6:17912287 Csa06g03402 Csa-Chr6:28181168 8.30E-165 transposed
Csa04g02721 Csa-Chr4:26244040 Csa06g03402 Csa-Chr6:28181168 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03402 K05387 - csv:101213408 1832.38