Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03402 | ATGAGGATAGTTTGCATTCTAGTATTGATACTTCTCTTCAGTGGGAGTTACTCATTTGGAGACGGCGCAAATGTATCTCCGAGACCTGAAGTTGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATAGGCAAAGTTGGAAAAATTGCTGTAGAAGCTGCCATCGAGGATGTAAATTCTAATCCATCCATTATGGGGGGGACGAAACTGAAGCTCAGTTTACATGATACCAACTACAGTGGATTTTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACCAAGACTATGGCCATAATTGGCCCCCAAAATTCTGTAACTGCTCATGTCATATCTCATATTGCAAATGAGCTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCGCAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTTCCAATGGAAAGAGGTGATTGCTATCTTTGTTGATGACGATCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAGACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCTGATGCTAGTCGAGATGTGGTCACTGATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGAATACTTGTTATTCACACTTATGAGACCACAGGTATGGTTGTGCTCAGTGTGGCTCAATATCTTGGATTGACAGGGCCTGGGTACGTTTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTACTACTTCTATGGAAAATATTCAAGGACTTGTTGCTTTACGTCTTTATACACCAGATTCTGTACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTCACTGATGTAAAGTCATCAAGTGGTTCGCTCGGATTGAGTACTTATGGATTATATGCTTATGATACTGTTTGGATACTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAACACTTTCGAAGTTAACCGGGGTTGATGTTAGAACTTTGAATCTCAACTCTATGAACATCTTCAATGGTGGGAAGACACTACTGGACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGAAAGGGATTTAATTCATCCTGCGTTTGAAGTGATCAATATAATCGGCACAGGGGAAAGAAGAATTGGTTATTGGTCTAACTATTCTGGCCTGTCAATTGTGCCTCCTGAAACACTTTACTCGAAACCACCTAACCGAACCAGTTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGTGGGTGGGCATTTCCAAACACTGGGAGATATTTAAGAATTGGAGTTCCGAGGCGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACGGACATGTTCACAGGCTTCTGCATCGATGTCTTCACTGCAGCAATCAATTTCTTGCCTTATGCAGTCCCCTATAAGTTAATTCCTTTTGGGGATGGCCTTACTAATCCTAGTGGAACTGAACTGATTCGACTAATCACAACTGGCGTCTATGATGGGGCGATAGGGGACATTGCAATCATCACAAACCGAACCAGGATGGCTGATTTTACACAACCATACATAGAGTCTGGCCTAGTAGTTGTAGCCCCAGTGAAGAAGTTGAATTCTAGCGCTTGGGCCTTTTTACGACCGTTCACTGCGAGGATGTGGTGTGCTACCGCTGCTTCTTTCATTGTAATAGGAGCAGTTGTTTGGATTTTGGAACATAGGATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATCACCATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCATCGGCAAAATACAGTCAGTGCCCTCGGTCGCCTCGTGCTGATCATATGGCTATTTGTTGTTCTAATTATCAATTCAAGCTATACTGCAAGTTTGACTTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTGAAGGGGATTGAAACTTTGATTTCGAACAATGAACCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAACGATGGGCCAACAAATAATGGTGTTGCTGCTATTGTCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGTGAATACAGTATTGTTGGCCAAGAGTTCACAAAAAATGGGTGGGGATTTGCTTTCCCTCGCGACTCTCCATTAGCAGTTGACATGTCCACAGCTATTTTAAGACTGTCCGAAACCGGAGATCTTCAAAGAATCCATGACAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCCTCAAAAATTGAGGTGGATCGACTTCAGCTAAATAGCTTTTGGGGACTTTTTCTAATATGTGGAGTAGCTTGTGTGCTCGCTCTATCAATATACCTCTTTCAAATGGTGCGTCAATATAGCGAACATTACACTGAAGAACTCGGGTCTTCTGAGCAACCATCTAGATCTGCAAGCCTACATAGATTCCTTTCTTTTGCAGATGAAAAAGAAGAAGTCTTCAAAAGTCAATCCAAGCGAAGACGAATGCAAGAGGCTTCAGTTAGAAGCGTGAATGAAGAAAATTCAACAGGCAGTTCAAGAAAAAATGGCCATGGTTATGCTGATGGAGTTGATGCATGA | 2799 | 41.66 | MRIVCILVLILLFSGSYSFGDGANVSPRPEVVNIGALFSFRSMIGKVGKIAVEAAIEDVNSNPSIMGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWKEVIAIFVDDDHGRNGIAALGDQLNERRCKISLKVPLKPDASRDVVTDALVKVALTESRILVIHTYETTGMVVLSVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPTTSMENIQGLVALRLYTPDSVLKRNFVSRWTNFTDVKSSSGSLGLSTYGLYAYDTVWILAHAINAFLNEGGNLSFSTLSKLTGVDVRTLNLNSMNIFNGGKTLLDKILEVNFTGITGSVEFTPERDLIHPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNTGRYLRIGVPRRVSYQEFVSQVEGTDMFTGFCIDVFTAAINFLPYAVPYKLIPFGDGLTNPSGTELIRLITTGVYDGAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTARMWCATAASFIVIGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRQNTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNEPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPTNNGVAAIVDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDMSTAILRLSETGDLQRIHDKWLMKSACTSQASKIEVDRLQLNSFWGLFLICGVACVLALSIYLFQMVRQYSEHYTEELGSSEQPSRSASLHRFLSFADEKEEVFKSQSKRRRMQEASVRSVNEENSTGSSRKNGHGYADGVDA* | 933 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28181168 | 28185626 | + | CsaV3_6G047880.1 | Csa06g03402 | 535029 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03402 | 932 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 492 | 811 | IPR001638 | - | |
Csa06g03402 | 932 | CDD | GluR_Plant | 471 | 811 | - | - | |
Csa06g03402 | 932 | Gene3D | - | 50 | 399 | - | - | |
Csa06g03402 | 932 | Gene3D | - | 742 | 776 | - | - | |
Csa06g03402 | 932 | Gene3D | - | 147 | 424 | - | - | |
Csa06g03402 | 932 | MobiDBLite | consensus disorder prediction | 908 | 922 | - | - | |
Csa06g03402 | 932 | PANTHER | GLUTAMATE RECEPTOR 3.6 | 13 | 922 | - | - | |
Csa06g03402 | 932 | SUPERFAMILY | Periplasmic binding protein-like I | 27 | 462 | IPR028082 | - | |
Csa06g03402 | 932 | PIRSF | IGluLR_plant | 1 | 928 | IPR017103 | - | |
Csa06g03402 | 932 | SMART | GluR_14 | 472 | 813 | IPR001320 | GO:0015276|GO:0016020 | |
Csa06g03402 | 932 | SUPERFAMILY | Periplasmic binding protein-like II | 449 | 814 | - | - | |
Csa06g03402 | 932 | MobiDBLite | consensus disorder prediction | 894 | 932 | - | - | |
Csa06g03402 | 932 | Pfam | Receptor family ligand binding region | 50 | 408 | IPR001828 | - | |
Csa06g03402 | 932 | Gene3D | - | 777 | 810 | - | - | |
Csa06g03402 | 932 | Gene3D | - | 582 | 708 | - | - | |
Csa06g03402 | 932 | CDD | PBP1_GABAb_receptor_plant | 33 | 428 | IPR044440 | - | |
Csa06g03402 | 932 | Pfam | Ligand-gated ion channel | 812 | 844 | IPR001320 | GO:0015276|GO:0016020 | |
Csa06g03402 | 932 | Gene3D | - | 464 | 581 | - | - | |
Csa06g03402 | 932 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 45 | 61 | - | - | |
Csa06g03402 | 932 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 105 | 133 | - | - | |
Csa06g03402 | 932 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 322 | 334 | - | - | |
Csa06g03402 | 932 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 13 | 922 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02681 | Csa-Chr2:23361035 | Csa06g03402 | Csa-Chr6:28181168 | 0 | dispersed | |
Csa02g02683 | Csa-Chr2:23375718 | Csa06g03402 | Csa-Chr6:28181168 | 1.49E-160 | dispersed | |
Csa02g02684 | Csa-Chr2:23395424 | Csa06g03402 | Csa-Chr6:28181168 | 0 | dispersed | |
Csa06g03402 | Csa-Chr6:28181168 | Csa07g00367 | Csa-Chr7:2736621 | 0 | dispersed | |
Csa06g01991 | Csa-Chr6:17912287 | Csa06g03402 | Csa-Chr6:28181168 | 8.30E-165 | transposed | |
Csa04g02721 | Csa-Chr4:26244040 | Csa06g03402 | Csa-Chr6:28181168 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03402 | K05387 | - | csv:101213408 | 1832.38 |