Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03404 ATGTTGCTGGTTGTTTATTATTTGTGTTTGAGCTTGTTGTGGGGGAAATCGTGGGGGGCTCCGGCCAGCGATGGCACCACGAGGGAGCTCGATCAGACTCCGACATGGGCTGTTGCTGGTGTTTGTGCTATTATTATCCTTATTTCTATCGCCTTGGAGAAACTCCTTCATAAAGCTGGAACGTGGCTCACGGAAAAGCACAAGAGAGCTCTCTTTGAAGCTCTGGAGAAAGTTAAAGCTGAGCTGATGATTCTGGGTTTCATTTCACTGCTCCTCACCTTTGGACAGAACTACATCATTAAAATATGCATTCCCACAAAGGTTGCAAATACTATGTTGCCATGTGCTGCCAAAGAGGACAAATTGGAGAAGGGAGATGAAGGCGAACATCATCGACGACTTCTAATGTATGAACGGAGGTTCCTGGCTGCTGCTGGTGGCGCTGTTAGTTGCAAAGAAGGTCATGTGCCGCTTATATCTATCTCGGGATTGCATCAGTTGCACTTGTTTATCTTCTTCTTAGCCGTATTTCATGTGGTATATAGTGCCATCACAATGATGCTTGGGAGGCTAAAGATTCGAGGTTGGAAGGCATGGGAGGAGGAGACCTCAACTCACAATTATGAGTTCTCAAATGATAATGCACGATTCAGGCTTACTCACGAAACATCATTTGTGAAAGCCCACACGAGTTTTTGGACAAAACTTCCCGTCTTCTTTTATATTGGATGCTTCTTCCGACAATTTTTCAAGTCCGTTGGTAAGGCTGACTACTTGGCATTACGTAATGGATTCATCGCCGTTCACCTTGCTCCAGGAAGTAAATTTGACTTTCAAAAATATATCAAAAGGTCTCTAGAAGATGACTTCAAAATAATTGTGGGAGTTAGTCCCGTGCTTTGGACATCGTTTGTGGTCTTCTTGCTCATAAATGTTTACGGATGGCAAGCATTGTTTTGGTCATCCTTAGTTCCTGTGATCATAATCCTAGCTGTTGGAACCAAGCTTCAAGGAGTTATGACAAAGATGGCTCTCGAAATTACAGAAAGACATGCTGTTGTCCAAGGAATTCCTCTCGTTCAGGCATCAGATAAATATTTTTGGTTTGGCAAGCCTCAGCTGGTTCTTTACCTCATCCACTTCGCTTTATTTTCGAATGCATTCCAAATAACATACTTCTTCTGGATTTGGTATTCCTTTGGGTTAAAATCCTGCTTCCATACTGATTTCAAGCTCGCAATCATTAAAGTTGGTCTCGGGGTTGGCGTTCTCTGTCTCTGCAGTTATATAACTCTTCCACTCTATGCTCTTGTCACTCAGATGGGTACGCGTATGAAGAAGTCAATCTTTGATGAACAAACATCGAAGGCTCTTAAGAAGTGGCACATGGCTGTTAAGAAGCGACATGGGAAGTCCCCAACTCGAAAACTAGGGAGTCCAAGTTCATCACCAATTCATCCATCATCAGGATACGCATTGCATCGTTTCAAGACCACAGGTCACTCAAACAGATCATCCATGTATGATGAGAATGACGCATCAGATTATGAAGTCGACACTCCAAATTTTACAGTTAGAATAGACCATGGTGATGAACATCAAGCTGAAATAATTGAACCCCAGCATACAGAAAAAAGGAATGAAGACGATTTCTCTTTTGTCAAACCTGGACCAACGAAATGA 1683 42.78 MLLVVYYLCLSLLWGKSWGAPASDGTTRELDQTPTWAVAGVCAIIILISIALEKLLHKAGTWLTEKHKRALFEALEKVKAELMILGFISLLLTFGQNYIIKICIPTKVANTMLPCAAKEDKLEKGDEGEHHRRLLMYERRFLAAAGGAVSCKEGHVPLISISGLHQLHLFIFFLAVFHVVYSAITMMLGRLKIRGWKAWEEETSTHNYEFSNDNARFRLTHETSFVKAHTSFWTKLPVFFYIGCFFRQFFKSVGKADYLALRNGFIAVHLAPGSKFDFQKYIKRSLEDDFKIIVGVSPVLWTSFVVFLLINVYGWQALFWSSLVPVIIILAVGTKLQGVMTKMALEITERHAVVQGIPLVQASDKYFWFGKPQLVLYLIHFALFSNAFQITYFFWIWYSFGLKSCFHTDFKLAIIKVGLGVGVLCLCSYITLPLYALVTQMGTRMKKSIFDEQTSKALKKWHMAVKKRHGKSPTRKLGSPSSSPIHPSSGYALHRFKTTGHSNRSSMYDENDASDYEVDTPNFTVRIDHGDEHQAEIIEPQHTEKRNEDDFSFVKPGPTK* 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28194532 28200136 + CsaV3_6G047900.1 Csa06g03404 535031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03404 560 PANTHER MLO-LIKE PROTEIN 16 550 - -
Csa06g03404 560 MobiDBLite consensus disorder prediction 529 553 - -
Csa06g03404 560 MobiDBLite consensus disorder prediction 467 490 - -
Csa06g03404 560 Pfam Mlo family 28 483 IPR004326 GO:0006952|GO:0016021
Csa06g03404 560 PANTHER MLO-LIKE PROTEIN 1 16 550 IPR004326 GO:0006952|GO:0016021
Csa06g03404 560 MobiDBLite consensus disorder prediction 529 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02821 Csa-Chr5:28700815 Csa06g03404 Csa-Chr6:28194532 2.50E-164 dispersed
Csa06g01679 Csa-Chr6:14713131 Csa06g03404 Csa-Chr6:28194532 1.68E-176 dispersed
Csa06g03404 Csa-Chr6:28194532 Csa06g03661 Csa-Chr6:29433070 1.39E-123 dispersed
Csa06g01952 Csa-Chr6:17630672 Csa06g03404 Csa-Chr6:28194532 0 transposed
Csa03g00015 Csa-Chr3:258268 Csa06g03404 Csa-Chr6:28194532 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03404 K08472 - csv:101212923 1126.69