Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03415 ATGGACCCCACAAATGGAAATAATGCTACCAGCAAAAGCCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTCGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTCAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATAGGCTTGCAAAATACCTTCCCGACTCCTCGTCTGATGGGAAAAAGACCGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAACTGCAGTTACGGATTGAAGCCCAAGGCAAGTACTTGAAGAAGATAATCGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGCTGCCTCTGCCTTTACAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGTTGATAAAAACGACCCCTCGACACCCGCGTCCACATCCGAGTTTCCTCGCCAGGAGAAGGTATCAAAGGAACGTGCCCAAGGCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCATTGACGCCTGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTCCGAGGCCAGTGAAGAAGCAAATACAGTCAAAGATGATACTTGCACATCAGATACTGGAGTCTAGTTTAAACTCCACTCACAAGGAATGA 789 46.64 MDPTNGNNATSKSPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPAASAFTAPASGDNCPEVDKNDPSTPASTSEFPRQEKVSKERAQGKSVSIDDSFSSHHEPLTPDSGCHSSPSESPRPVKKQIQSKMILAHQILESSLNSTHKE* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28239422 28243124 - CsaV3_6G048010.1 Csa06g03415 535042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03415 262 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Csa06g03415 262 Gene3D - 18 77 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 79 95 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 78 101 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 207 238 - -
Csa06g03415 262 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Csa06g03415 262 MobiDBLite consensus disorder prediction 166 241 - -
Csa06g03415 262 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Csa06g03415 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 1 261 - -
Csa06g03415 262 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Csa06g03415 262 Coils Coil 108 128 - -
Csa06g03415 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 261 IPR044848 GO:0003700
Csa06g03415 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03641 Csa-Chr3:32464112 Csa06g03415 Csa-Chr6:28239422 3.14E-75 dispersed
Csa04g02036 Csa-Chr4:20591351 Csa06g03415 Csa-Chr6:28239422 7.79E-51 dispersed
Csa06g01145 Csa-Chr6:9545350 Csa06g03415 Csa-Chr6:28239422 5.39E-46 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa07g01218 Csa-Chr7:11974425 7.72E-45 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa06g03417 Csa-Chr6:28244544 2.62E-32 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32175 PF00249 Myb_DNA-binding 8.30E-08 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03415 - - csv:101215173 491.886