Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03415 ATGGACCCCACAAATGGAAATAATGCTACCAGCAAAAGCCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTCGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTCAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATAGGCTTGCAAAATACCTTCCCGACTCCTCGTCTGATGGGAAAAAGACCGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAACTGCAGTTACGGATTGAAGCCCAAGGCAAGTACTTGAAGAAGATAATCGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGCTGCCTCTGCCTTTACAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGTTGATAAAAACGACCCCTCGACACCCGCGTCCACATCCGAGTTTCCTCGCCAGGAGAAGGTATCAAAGGAACGTGCCCAAGGCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCATTGACGCCTGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTCCGAGGCCAGTGAAGAAGCAAATACAGTCAAAGATGATACTTGCACATCAGATACTGGAGTCTAGTTTAAACTCCACTCACAAGGAATGA 789 46.64 MDPTNGNNATSKSPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPAASAFTAPASGDNCPEVDKNDPSTPASTSEFPRQEKVSKERAQGKSVSIDDSFSSHHEPLTPDSGCHSSPSESPRPVKKQIQSKMILAHQILESSLNSTHKE* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28239422 28243124 - CsaV3_6G048010.1 Csa06g03415 535042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03415 262 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Csa06g03415 262 Gene3D - 18 77 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 79 95 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 78 101 - -
Csa06g03415 262 MobiDBLite consensus disorder prediction 207 238 - -
Csa06g03415 262 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Csa06g03415 262 MobiDBLite consensus disorder prediction 166 241 - -
Csa06g03415 262 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Csa06g03415 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 1 261 - -
Csa06g03415 262 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Csa06g03415 262 Coils Coil 108 128 - -
Csa06g03415 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 261 IPR044848 GO:0003700
Csa06g03415 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03415 - - - csv:101215173 491.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03641 Csa-Chr3:32464112 Csa06g03415 Csa-Chr6:28239422 3.14E-75 dispersed
Csa04g02036 Csa-Chr4:20591351 Csa06g03415 Csa-Chr6:28239422 7.79E-51 dispersed
Csa06g01145 Csa-Chr6:9545350 Csa06g03415 Csa-Chr6:28239422 5.39E-46 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa07g01218 Csa-Chr7:11974425 7.72E-45 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa06g03417 Csa-Chr6:28244544 2.62E-32 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32175 PF00249 Myb_DNA-binding 8.30E-08 CL0123 Csa TF