Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03417 ATGTTTCCTAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGTCCCCGTGGTTCTGTTGCTTCTGACCTCACCCACACTCACCGTGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCACGCCTCCGATGGACTGCGGATCTTCACGAGCGATTCGTCGATGCCGTTACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCTGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATACCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAGGTGCAAAGTAAATTGCATCTGCAAGTTGAGCTAGCTTACCTTACCATCGTTGGGCAGGCAGAGAAGCACCTACAAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGTAGGTGCAGTTTCGGACTCAGACAGCAAGAAGTCCGAAGGACAGGATCGCAAGAGCCCGAGAAGTACTTCCATCGACCCACTTGGTTTCTACACCACGCAATCACAAGAGATGGAAAGAGTGAATGGAACAGAAGAAGTGCAGGCTAATCTTCCTTGCCAGAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCAAATGAGAGTCCCGGGGGATTGGCTATGGAAAAATCTCCTGCTGCAAGCAAGAAAAACATGGTTAACTTGGGTTCAGCAACTGCATCTTTGATTTGGAGTGGAGCCAAGGAAGGAATACAAAATGCTAACATCATCCAAGTTAACCATCATGGCGTGTCCGGATGCGACATGTGGGGATAA 969 47.16 MFPRLVNPDGDIQIHGPRGSVASDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVELAYLTIVGQAEKHLQIRQDAERRYLAMLERACKMLADQFIVGAVSDSDSKKSEGQDRKSPRSTSIDPLGFYTTQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPAASKKNMVNLGSATASLIWSGAKEGIQNANIIQVNHHGVSGCDMWG* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28244544 28249543 - CsaV3_6G048030.1 Csa06g03417 535044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03417 322 MobiDBLite consensus disorder prediction 202 225 - -
Csa06g03417 322 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Csa06g03417 322 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g03417 322 Pfam MYB-CC type transfactor, LHEQLE motif 137 191 IPR025756 -
Csa06g03417 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Csa06g03417 322 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Csa06g03417 322 Gene3D - 41 99 - -
Csa06g03417 322 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 18 316 - -
Csa06g03417 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 316 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03417 Csa-Chr6:28244544 Csa07g01218 Csa-Chr7:11974425 4.11E-43 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa06g03417 Csa-Chr6:28244544 2.62E-32 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32176 PF14379 Myb_CC_LHEQLE 3.20E-11 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03417 - - csv:105435941 648.662