Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03417 ATGTTTCCTAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGTCCCCGTGGTTCTGTTGCTTCTGACCTCACCCACACTCACCGTGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCACGCCTCCGATGGACTGCGGATCTTCACGAGCGATTCGTCGATGCCGTTACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCTGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATACCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAGGTGCAAAGTAAATTGCATCTGCAAGTTGAGCTAGCTTACCTTACCATCGTTGGGCAGGCAGAGAAGCACCTACAAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGTAGGTGCAGTTTCGGACTCAGACAGCAAGAAGTCCGAAGGACAGGATCGCAAGAGCCCGAGAAGTACTTCCATCGACCCACTTGGTTTCTACACCACGCAATCACAAGAGATGGAAAGAGTGAATGGAACAGAAGAAGTGCAGGCTAATCTTCCTTGCCAGAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCAAATGAGAGTCCCGGGGGATTGGCTATGGAAAAATCTCCTGCTGCAAGCAAGAAAAACATGGTTAACTTGGGTTCAGCAACTGCATCTTTGATTTGGAGTGGAGCCAAGGAAGGAATACAAAATGCTAACATCATCCAAGTTAACCATCATGGCGTGTCCGGATGCGACATGTGGGGATAA 969 47.16 MFPRLVNPDGDIQIHGPRGSVASDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVELAYLTIVGQAEKHLQIRQDAERRYLAMLERACKMLADQFIVGAVSDSDSKKSEGQDRKSPRSTSIDPLGFYTTQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPAASKKNMVNLGSATASLIWSGAKEGIQNANIIQVNHHGVSGCDMWG* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28244544 28249543 - CsaV3_6G048030.1 Csa06g03417 535044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03417 322 MobiDBLite consensus disorder prediction 202 225 - -
Csa06g03417 322 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Csa06g03417 322 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g03417 322 Pfam MYB-CC type transfactor, LHEQLE motif 137 191 IPR025756 -
Csa06g03417 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Csa06g03417 322 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Csa06g03417 322 Gene3D - 41 99 - -
Csa06g03417 322 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 18 316 - -
Csa06g03417 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 316 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03417 - - - csv:105435941 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03417 Csa-Chr6:28244544 Csa07g01218 Csa-Chr7:11974425 4.11E-43 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa06g03417 Csa-Chr6:28244544 2.62E-32 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32176 PF14379 Myb_CC_LHEQLE 3.20E-11 No_clan Csa TF