Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03433 ATGGCGTCAATTGCTGGTTCCAAAGCTTCGTCAAATCAGCCACAGCAACCAGCTAATGGTGAAATGGCTAATGGAAAGGATACCGGGTCCTTGCCTCCCCAGATTTCAAAGTTAAGCAAACCTGTATCAGTTATTTCTGACCAGTCTAAATCAGTGAAGAGTATCTCAAAGAAGGATGTGGAATTATCTTCCGACAAAAAGTCGCCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCGTCTCCTGGTCTGAAACAAACACCAACTGAAGTAGATTCCCCTCTCAATGAAGCTAAATGCTCACCTGGAAGCTCACTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGTAAAGTAAGTGATGGGACTAGTTGTCTTGCCAAGACGAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTAGAGGGAGCACAAGCAGTGATATAAGCGACGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAAGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCTATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTCGCAATGAAGGTTATGGATAAAAATACTTTAGCGAGTCGTAAGAAGTTGCTTCGTGCTCAGACAGAAAGAGAAATACTTCAATCTCTCGATCACCCCTTCCTTCCAACGTTATACACTCACTTTGAGACAGAAAAATTCTCGTGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCATACCCTAAGGCAGAGGCAACCAGGGAAGCATTTTGCCGAGCAGGCAGTAAAGTACGTTAAGACTGTTGAGTTTTTTGTCAAACATATCTTAACTTCTCCTCACTGGATGACTACCTCAACAGCCATTAGGCGTCTGATGAACAATGGGAAGTCTAAGCAGGATTACAGCCATAGATACTACTCAAGTTGGCTCGTCTTATCTATGATGAAGTGTTGTTTAAGAATTGAACAGCAGTCACTTGAGAATGTTCCGACTTTTTTGTCAGACGTGAACTCCAAGGCAAAAGCAGAATGGCTCAAGGACTATATCCCCCTTATTGTACTCGTCAAATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTCCTTGTGAGAGAAGACGGACACATAATGCTTTCAGACTTTGACCTATCTCTCCGTTGTGCTGTTAACCCAACTCTGGTAAAAAATCTCTCTGCAGAGTCTGAGGCTTTGAGAAAGAACACAGGTTACTGTGTGCAGCCTGCTTGCATTGAGCCCTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATTTGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATTGCAGAACCAACCGATGCCCGATCCATGTCTTTTGTAGGAACTCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTCTATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCTCTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCGAAGGATCTGATAAGGGGATTGCTAGTGAAGGAGCCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTCGAAGGTGTAAATTGGGCATTAATACGTTGTGCTACTCCTCCTGAAATTCCTAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTAGCGTCAACCAGTGAAAAGGCCGTTGCAATTGCAGCAATTGCTCCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTTGATTTCTTTTAG 2118 43.2 MASIAGSKASSNQPQQPANGEMANGKDTGSLPPQISKLSKPVSVISDQSKSVKSISKKDVELSSDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTPTEVDSPLNEAKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDISDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFAEQAVKYVKTVEFFVKHILTSPHWMTTSTAIRRLMNNGKSKQDYSHRYYSSWLVLSMMKCCLRIEQQSLENVPTFLSDVNSKAKAEWLKDYIPLIVLVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDLGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAVAIAAIAPDKKASDNYLEFDFF* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28317839 28321367 + CsaV3_6G048190.1 Csa06g03433 535060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03433 705 ProSiteProfiles Protein kinase domain profile. 217 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03433 705 CDD STKc_phototropin_like 216 670 - -
Csa06g03433 705 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 705 - -
Csa06g03433 705 SMART serkin_6 217 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03433 705 PANTHER FLIPPASE KINASE 1-RELATED 5 705 - -
Csa06g03433 705 Pfam Protein kinase domain 544 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03433 705 SUPERFAMILY Protein kinase-like (PK-like) 192 674 IPR011009 -
Csa06g03433 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Csa06g03433 705 Gene3D Phosphorylase Kinase; domain 1 210 335 - -
Csa06g03433 705 MobiDBLite consensus disorder prediction 1 51 - -
Csa06g03433 705 MobiDBLite consensus disorder prediction 1 76 - -
Csa06g03433 705 MobiDBLite consensus disorder prediction 88 140 - -
Csa06g03433 705 Gene3D Transferase(Phosphotransferase) domain 1 409 664 - -
Csa06g03433 705 Pfam Protein tyrosine and serine/threonine kinase 218 461 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01287 Csa-Chr6:10764787 Csa06g03433 Csa-Chr6:28317839 3.02E-54 dispersed
Csa06g02664 Csa-Chr6:23445828 Csa06g03433 Csa-Chr6:28317839 2.59E-53 dispersed
Csa06g03433 Csa-Chr6:28317839 Csa06g01288 Csa-Chr6:10775950 9.14E-40 dispersed
Csa01g01551 Csa-Chr1:11109475 Csa06g03433 Csa-Chr6:28317839 1.27E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78431 PF07714 PK_Tyr_Ser-Thr 1.20E-17 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03433 K08286 - csv:101209748 590.112