Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03453 ATGCAAGCATCTCAGAATCGGCAGGCTTCATCTATGATCCATGAGATGGATCCGTACTATTTATCTGGTTTTCACGTATTGGGAAACCACGTCTCTCCTGACGCAAGCAGCCAGGGAAACAGTGTTAACTTCTCTTCCTATAAGGATCAGTTCTTTACTCTGGAATCATTCCCGGCTACTGCTGATCTGAGTGGCTCTAATTCTCCTTCTACTGGGAGTGTTCTGTCGTCTAGGAGCCCCTTCTCACCTCAGGGTTCTCAATCATGCTCATCAGATCAACACCATTCCTTTGAGAACACATGTGGATCACCAATGAGTGGATGCTCTGTAACTGATGAAGACAACGACATAAAGCACAAGCTTAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCCGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGCGCATCGAGATGCTTCAGTGGCAAGGCGGAACTGGAATCAAGTGGTTGAAATGATTCCTAAACTAAATCTTCAGGACACGCTTATCCATTGTGCCCAAGCAATTCATGATTCCGATCTAAATGTGGCAACACTTTTTATGGATGTTTTAGGGCAGATGGTTTCCGTCTCTGGCGACCCATCCCAGAGATTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAACGATCTGGGAGTGCAATATACAAATCCCTAAAGTGCAAAGAGCCAACAAGCTCTGAACTAATGTCATATATGTCTATTCTATTCCAGATCTGCCCGTACTTCAAATTTGGTTACACATCTGCTAATGCTGTAATTAGGGAGGCCATGGTCAATGAACCCATAATCCACATCATTGATTTTCAGATTGCTCAGGGTAGTCAGTATATATCTCTCATCCAGGATCTTGCCAATCGGCCCGGCGGACCCCCAGCTCTTCTTCGCATTACAGGTGTGGATGATTCCCAATCAGCTCATGCTCGAGGAGGGGGACTACAAATTGTGGGACAGAACTTAGCTCAGCTGGCTCAATCAAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCCGGTTGTGACGTTGAACACAGTAATCTTATAATACAACCAGGAGAAGCATTGGCTGTAAATTTTCCATACACCTTACACCACATGCCAGATGAGAGCGTGAGCACACAGAATCATCGAGACCGGCTTCTTAGGCTGGTTAAAAGTCTCTCACCGAAAGTAGTAACCATTATTGAGCAGGAATCCAACACCAACACATCCCCATTCCTTCTTCGCTTCATAGAGACACTAGATTATTACACTGCTATGTTCGAGTCAATAGATGTAGCTCGTTCAAGAGATGACAAGCAGAGAATCAGGGCAGAGCAACACTGTGTGGCCCGAGACATAGTGAACATGGTAGCTTGTGAAGGGTTCGAAAGGGTAGAACGTCATGAACTCCTTGGCAAATGGAGGATGAGAATGAGAATGGCTGGTTTCACTCCATATACAATGAGCCCATCCGTTACTGGAGCTGTTAGAAATATGTTGAGAGATTTCAATGAGAACTACAGACTCCAAGAAGTTGATGGAGCTATCTACCTTGGATGGAAAAACAGAGCAATGGCAACCGCATCTGCATGGAGATGA 1626 45.14 MQASQNRQASSMIHEMDPYYLSGFHVLGNHVSPDASSQGNSVNFSSYKDQFFTLESFPATADLSGSNSPSTGSVLSSRSPFSPQGSQSCSSDQHHSFENTCGSPMSGCSVTDEDNDIKHKLKELEISLLGPESDIVDSCYCSFRGGAHRDASVARRNWNQVVEMIPKLNLQDTLIHCAQAIHDSDLNVATLFMDVLGQMVSVSGDPSQRLGAYLLEGLRARLERSGSAIYKSLKCKEPTSSELMSYMSILFQICPYFKFGYTSANAVIREAMVNEPIIHIIDFQIAQGSQYISLIQDLANRPGGPPALLRITGVDDSQSAHARGGGLQIVGQNLAQLAQSKGIPFQFHAAAMSGCDVEHSNLIIQPGEALAVNFPYTLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIIEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTPYTMSPSVTGAVRNMLRDFNENYRLQEVDGAIYLGWKNRAMATASAWR* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28391622 28393247 + CsaV3_6G048390.1 Csa06g03453 535080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03453 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 540 IPR005202 -
Csa06g03453 541 MobiDBLite consensus disorder prediction 62 96 - -
Csa06g03453 541 Pfam GRAS domain family 171 541 IPR005202 -
Csa06g03453 541 ProSiteProfiles GRAS family profile. 161 541 IPR005202 -
Csa06g03453 541 PANTHER SCARECROW-LIKE PROTEIN 13 12 540 IPR030005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00440 Csa-Chr3:3721517 Csa06g03453 Csa-Chr6:28391622 0 dispersed
Csa03g02273 Csa-Chr3:20205425 Csa06g03453 Csa-Chr6:28391622 1.35E-149 dispersed
Csa06g03453 Csa-Chr6:28391622 Csa07g01411 Csa-Chr7:14297157 5.65E-142 dispersed
Csa06g03453 Csa-Chr6:28391622 Csa06g00941 Csa-Chr6:7561913 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32178 PF03514 GRAS 6.80E-125 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03453 - - csv:101207883 1086.25