Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03473 ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCAAAAGGCAAAACCTTATCAACCCCTTCCTCTTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATGTTGAAACTTGGGAGACATCAAAGGAAGATCAGGAAGAGTGGACAGCTGATTTATCTCAACTCTTCATTGGTAACAAATTTGCCTCCGGCGCTCACAGTCGGATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAGGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCCGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTAAACAAGAAAGAGCCGTATTCACTCTCAACAGAAACAATACTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGATCTCAAATCAAACAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACCTCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCACCGGAGATGATCAAAGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAACTCACCACGGCTCTGCTTCCCTTTCAAGGAATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGGTACCAAAATCTCAAACTCCCCCTTCCACAAGTAATGCTGATTTTGATACTTACCTGTTTGAAGAAAAATGTCGATCAATCGTCAATGAGAGACCACCATTGCCGGCGAGTTGTCAGCCGGCGCTAGCCCACCTGATTAAACGGTGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGCGGCGTTAGAGAAATACGACGAGTGTGTGAAAGAGGGACTTCCTCTTGCACACCATAGAAGATTGGTAAACAAAAACGCAATTATTGAACGCTTGAAAGCTTGTGCTTGA 1176 44.9 MATSCFGSLRIRKSKGKTLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKVPKSQTPPSTSNADFDTYLFEEKCRSIVNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVAALEKYDECVKEGLPLAHHRRLVNKNAIIERLKACA* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28479047 28480421 - CsaV3_6G048590.1 Csa06g03473 535100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03473 391 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Csa06g03473 391 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Csa06g03473 391 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Csa06g03473 391 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Csa06g03473 391 Pfam Protein tyrosine and serine/threonine kinase 78 358 IPR001245 GO:0004672|GO:0006468
Csa06g03473 391 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 300 - -
Csa06g03473 391 CDD STKc_MAP3K-like 83 358 - -
Csa06g03473 391 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Csa06g03473 391 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 320 385 - -
Csa06g03473 391 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 300 - -
Csa06g03473 391 SUPERFAMILY Protein kinase-like (PK-like) 51 358 IPR011009 -
Csa06g03473 391 SMART serkin_6 76 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03473 391 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 320 385 - -
Csa06g03473 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Csa06g03473 391 ProSiteProfiles Protein kinase domain profile. 76 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03473 391 Gene3D Transferase(Phosphotransferase) domain 1 159 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01236 Csa-Chr1:7677514 Csa06g03473 Csa-Chr6:28479047 1.01E-103 dispersed
Csa06g03473 Csa-Chr6:28479047 Csa06g03630 Csa-Chr6:29264801 8.43E-111 dispersed
Csa06g03473 Csa-Chr6:28479047 Csa01g00844 Csa-Chr1:5290383 2.40E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78432 PF07714 PK_Tyr_Ser-Thr 8.80E-62 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03473 - - csv:101204587 715.687