Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03487 ATGGATGTTCCAAGTGGGAATTGTTCTGGAGGTATGATGAATTTTGGTGATCAAAATAATAATAACAACAACAATAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCTGCTTCTCAACAAGGTGGAGATGGTTCTTCATGTACTCCATTTCTTCCTCTTCCTCCTCCTAATTACAACAACAACAACAATACTTCTATTTGTAATTACTTCATGGACGAAACCAACAACAACAACAACGACGAGAGTAGTAATGGCGCCAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCTCACTACCACCGTCTCCTTGCTGCCTATGTCAACTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGCGGCTTGAAGAAGCGTGTGCTAGTGCGGTAACAATGAGTAGTGGTAATAATGGTGGTGGGTGTATTGGGGAAGATCCAGCGCTTGATCAGTTTATGGAAGCTTATTGTGAGATGCTTACCAAATACGAACAAGAACTTTCCAAACCCTTTAGAGATGCTATGCTTTTTCTTCAACGAATTGACTCTCAATTCAAAGCTCTCTCTATTTCCTCCTCTCATCTCCCTCCAGCTTGTGGCGAGGCGTTTGATAGGAACGGATCATCTGAAGAGGAAGTTGACATCAATGGGCACTCGATCGACCCTCAAGCGGAAGATCGTGAACTGAAAGGTCAGCTCCTGCGCAAATACAGTGGATACTTAGGCAGTTTGAAACAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGTTACCTAAGGAAGCCAGACAACAACTTCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGTTAGCTTTAGCTCAATCAACGGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAACCAAAGAAAAAGACACTGGAAACCATCTGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGATACTGTCTTAGGGAATCCTTTTCCCTTGGATATATCTCCTGCTCTACTTTAA 1056 42.42 MDVPSGNCSGGMMNFGDQNNNNNNNNGLCSMMMMMPLISASQQGGDGSSCTPFLPLPPPNYNNNNNTSICNYFMDETNNNNNDESSNGANSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACASAVTMSSGNNGGGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHLPPACGEAFDRNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPALL* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28557436 28560416 + CsaV3_6G048730.1 Csa06g03487 535114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03487 351 SMART HOX_1 255 320 IPR001356 GO:0003677
Csa06g03487 351 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
Csa06g03487 351 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Csa06g03487 351 Gene3D - 258 320 - -
Csa06g03487 351 SMART KNOX2_2 144 195 IPR005541 GO:0003677|GO:0005634
Csa06g03487 351 Pfam ELK domain 233 254 IPR005539 GO:0003677
Csa06g03487 351 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 340 - -
Csa06g03487 351 SUPERFAMILY Homeodomain-like 255 329 IPR009057 -
Csa06g03487 351 Pfam KNOX1 domain 95 133 IPR005540 GO:0003677|GO:0005634
Csa06g03487 351 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
Csa06g03487 351 SMART ELK_2 233 254 IPR005539 GO:0003677
Csa06g03487 351 CDD homeodomain 265 317 IPR001356 GO:0003677
Csa06g03487 351 ProSitePatterns 'Homeobox' domain signature. 291 314 IPR017970 GO:0000981|GO:0006355
Csa06g03487 351 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Csa06g03487 351 PANTHER - 9 340 - -
Csa06g03487 351 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02412 Csa-Chr2:21279435 Csa06g03487 Csa-Chr6:28557436 1.80E-30 dispersed
Csa04g02513 Csa-Chr4:24958037 Csa06g03487 Csa-Chr6:28557436 2.00E-88 dispersed
Csa05g02319 Csa-Chr5:25644124 Csa06g03487 Csa-Chr6:28557436 3.39E-72 dispersed
Csa06g03487 Csa-Chr6:28557436 Csa07g00330 Csa-Chr7:2465899 3.11E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32180 PF03791 KNOX2 5.50E-20 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03487 - - csv:101211566 676.396