Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03495 ATGGCTTCCCCATTATTATTATCAGCATTCCTCTTTTTCCTACCTACAGTTATCTCCACGCCCAAACCCAACAACTACTATAGCAAACCATCCCTCAACCCCATCGACGCATGCTGGCGGAACAACCGCAATTGGGCAGCCAACCGCCGTGCCCTGGCGGACTGTGCCGTTGGGTTTGGCAGCGACGCTTTGGGAGGCAAATTCGGGTCAATCTACGTAGTCACAGACCCATCGGACGACCCGGAATATCCAGAACCCGGAACACTGCGTTTTGGGGTGATCCAAATGCAGCCATTATGGATTGTGTTCGCAAGAGATATGGTGATTACTCTTAAAAGAGAATTGATGGTGAATAGCTATAAGACAATAGACGGGCGAGGGGCAAACGTGGAAATTAGCAATGGGCCTTGTATTACGATCCAAAATGTGAGCCACGTCATAATCCACGGGATCAGCATTCATGATTGTAAGCCGGGGAAGCCTGGACGCGTGAGGAGCTCGGTGACTCATTGTGGTGACCGCCAACAATCGGACGGTGACGCCATTTCGATATTCAGTTCTTCACATATTTGGATCGACCATTGCTATTTGGCTCGATGTACTGATGGGCTCATTGACGTCATTCATGCCTCCACTGCTGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTCATCCTTCTTGGTCACAACGATGAATTTAGAGATGATAGAATCATGAGAGTGACGGTAGCTTTTAATCGTTTCGGGGCTGGACTTGTTCAAAGAATGCCTAGGGTGAGATTTGGGTATGCTCATGTTGCCAATAATTGGTACAACAAATGGGAAATGTATGCGATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAATTACTTCATGGCTCCTAACGATCCTTTCTCAAAGCAGGTAACAAAGCGAGAGGTTTATGAGAGTGGATGGAAGTCGTGGAAATGGAGATCTTCAAATGATGTGTTTATGAATGGGGCTTATTTCATCCCAACAGGGTGGGGATCTTGTACGCCTTTCTACACCCAAGCTCAAGCTTTTCCTGTTGCTCATGGCTCTTTAGCTCCTCTTTTGACTATTGCCGCTGGCCCTTTGCGTTGTGTTCTTGCCAAACCTTGTTGA 1143 47.24 MASPLLLSAFLFFLPTVISTPKPNNYYSKPSLNPIDACWRNNRNWAANRRALADCAVGFGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQMQPLWIVFARDMVITLKRELMVNSYKTIDGRGANVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVTHCGDRQQSDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPNDPFSKQVTKREVYESGWKSWKWRSSNDVFMNGAYFIPTGWGSCTPFYTQAQAFPVAHGSLAPLLTIAAGPLRCVLAKPC* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28593144 28595237 + CsaV3_6G048810.1 Csa06g03495 535122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03495 380 SMART amb_all 106 303 IPR002022 -
Csa06g03495 380 Gene3D - 32 373 IPR012334 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Csa06g03495 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Csa06g03495 380 SUPERFAMILY Pectin lyase-like 53 376 IPR011050 -
Csa06g03495 380 Pfam Pectate lyase 113 297 IPR002022 -
Csa06g03495 380 PANTHER PECTATE LYASE 18-RELATED 18 378 IPR045032 GO:0030570
Csa06g03495 380 PANTHER PECTATE LYASE 18 378 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01041 Csa06g03495 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00519 Csa-Chr1:3450230 Csa06g03495 Csa-Chr6:28593144 3.19E-103 dispersed
Csa06g03495 Csa-Chr6:28593144 Csa01g00913 Csa-Chr1:5694974 9.68E-149 dispersed
Csa04g01452 Csa-Chr4:14404195 Csa06g03495 Csa-Chr6:28593144 6.98E-51 transposed
Csa01g01041 Csa-Chr1:6486533 Csa06g03495 Csa-Chr6:28593144 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03495 K01728 - csv:101210816 775.393