Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03495 | ATGGCTTCCCCATTATTATTATCAGCATTCCTCTTTTTCCTACCTACAGTTATCTCCACGCCCAAACCCAACAACTACTATAGCAAACCATCCCTCAACCCCATCGACGCATGCTGGCGGAACAACCGCAATTGGGCAGCCAACCGCCGTGCCCTGGCGGACTGTGCCGTTGGGTTTGGCAGCGACGCTTTGGGAGGCAAATTCGGGTCAATCTACGTAGTCACAGACCCATCGGACGACCCGGAATATCCAGAACCCGGAACACTGCGTTTTGGGGTGATCCAAATGCAGCCATTATGGATTGTGTTCGCAAGAGATATGGTGATTACTCTTAAAAGAGAATTGATGGTGAATAGCTATAAGACAATAGACGGGCGAGGGGCAAACGTGGAAATTAGCAATGGGCCTTGTATTACGATCCAAAATGTGAGCCACGTCATAATCCACGGGATCAGCATTCATGATTGTAAGCCGGGGAAGCCTGGACGCGTGAGGAGCTCGGTGACTCATTGTGGTGACCGCCAACAATCGGACGGTGACGCCATTTCGATATTCAGTTCTTCACATATTTGGATCGACCATTGCTATTTGGCTCGATGTACTGATGGGCTCATTGACGTCATTCATGCCTCCACTGCTGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTCATCCTTCTTGGTCACAACGATGAATTTAGAGATGATAGAATCATGAGAGTGACGGTAGCTTTTAATCGTTTCGGGGCTGGACTTGTTCAAAGAATGCCTAGGGTGAGATTTGGGTATGCTCATGTTGCCAATAATTGGTACAACAAATGGGAAATGTATGCGATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAATTACTTCATGGCTCCTAACGATCCTTTCTCAAAGCAGGTAACAAAGCGAGAGGTTTATGAGAGTGGATGGAAGTCGTGGAAATGGAGATCTTCAAATGATGTGTTTATGAATGGGGCTTATTTCATCCCAACAGGGTGGGGATCTTGTACGCCTTTCTACACCCAAGCTCAAGCTTTTCCTGTTGCTCATGGCTCTTTAGCTCCTCTTTTGACTATTGCCGCTGGCCCTTTGCGTTGTGTTCTTGCCAAACCTTGTTGA | 1143 | 47.24 | MASPLLLSAFLFFLPTVISTPKPNNYYSKPSLNPIDACWRNNRNWAANRRALADCAVGFGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQMQPLWIVFARDMVITLKRELMVNSYKTIDGRGANVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVTHCGDRQQSDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPNDPFSKQVTKREVYESGWKSWKWRSSNDVFMNGAYFIPTGWGSCTPFYTQAQAFPVAHGSLAPLLTIAAGPLRCVLAKPC* | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28593144 | 28595237 | + | CsaV3_6G048810.1 | Csa06g03495 | 535122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03495 | 380 | SMART | amb_all | 106 | 303 | IPR002022 | - | |
Csa06g03495 | 380 | Gene3D | - | 32 | 373 | IPR012334 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 55 | 72 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 78 | 103 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 114 | 130 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 178 | 199 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 258 | 277 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 280 | 299 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 321 | 345 | IPR018082 | - | |
Csa06g03495 | 380 | PRINTS | Pollen allergen Amb family signature | 351 | 374 | IPR018082 | - | |
Csa06g03495 | 380 | SUPERFAMILY | Pectin lyase-like | 53 | 376 | IPR011050 | - | |
Csa06g03495 | 380 | Pfam | Pectate lyase | 113 | 297 | IPR002022 | - | |
Csa06g03495 | 380 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 378 | IPR045032 | GO:0030570 | |
Csa06g03495 | 380 | PANTHER | PECTATE LYASE | 18 | 378 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g01041 | Csa06g03495 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00519 | Csa-Chr1:3450230 | Csa06g03495 | Csa-Chr6:28593144 | 3.19E-103 | dispersed | |
Csa06g03495 | Csa-Chr6:28593144 | Csa01g00913 | Csa-Chr1:5694974 | 9.68E-149 | dispersed | |
Csa04g01452 | Csa-Chr4:14404195 | Csa06g03495 | Csa-Chr6:28593144 | 6.98E-51 | transposed | |
Csa01g01041 | Csa-Chr1:6486533 | Csa06g03495 | Csa-Chr6:28593144 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03495 | K01728 | - | csv:101210816 | 775.393 |