Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03497 ATGGACAAAGGATGGGGTCTAACCCTTCGTGATTCTGAGCATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCCCCTCCCCCACCCACTCTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCTCCGGAAAACTTGGCCACACCGACTCCACTCCCGACGATAATAATCGTTTGGCCGTTGAGGTTGATTTTTTCTCCGCTAAGAAAAGAGTGGTTGATGATCTTGAGGCTGATCAAGACTCCAAACCTACTTCTACTACTTCTATCATTAAAGACGATAAAGCTTTGACCCCTCCGCCTCCCCCCACAACTTCCTTCAATCTCGTTAACACTGGGTTGCATCTGTTAACTGCCAACACCGGAAGCGATCAATCAACCGTGGATGATGGAATTTCATCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAGCTACAAGTGGAGCTTCAGCGAATGAACGCAGAGAATCACAAGCTAAGGGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACATATGCATCTCTTGAGCTTAATGCAACAGAAGCAGCAACAACAAAATCACCCCTCCGAACCCGCTCATCAACGAGAGATTGGTGGGGAGAAGAAATCAACGGAAATAAAACATGAAGTTGGAAAGGTAATGGTACCAAGACAATTTATGGATCTAGGACCCAGTGGAAATAGCAACATAGGTGAAAGCGAAGAATTATTATGTAATTCCTCATCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACATCAACAACAACAACAACAATACCGAAACAGCTTCCAAAAAAAGAGATCACGCGGAAATCATGCCTCCCAACTCCGATCACGAAAATTCCAAAAGATCCATCCCCAGAGAAGATAGCCCCGAATCAGAATCTCAGGGTTGGGGTCCCAACCATAAGACCCCCCGCTTCAACAATTCTTCTAATTCTAAACCACTTGACCAATCCACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGCTCCGAAGCTCCCATGATTTCCGATGGGTGTCAATGGAGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCTTGTCCACGAGCCTATTATCGCTGCACAATGGCTGTGGGTTGCCCTGTTCGCAAACAAGTTCAACGTTGTGCTGAAGATAGGACTATATTGATAACTACTTACGAAGGCAACCACAACCACCCACTTCCGCCGGCGGCGATGGCGATGGCGTCAACCACGACAGCGGCGGCTACTATGTTATTATCAGGGTCTATGTCAAGTGCGGACCATAACTTAATGAACCCAAATTTATTAGCCCGAGCCATACTTCCATGTTCTACAAGCATGGCTACAATTTCAGCTTCAGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCACCGCAGCCCCTTTCCAAGTGCCGTTCCCTGGCGGACAACCACCATCAGCCGCCGCCCAATTGCCTCAAGTTTTGGGACAAGCCTTGTATAACAATCAGTCAAAATTCTCCGGGCTACAGCTTTCTCATGAAATGGGAGCTAATTCCTCTCACTTGGGTCATCACCAAATTACACAACCCGCGAGTCCAGCTCAACCTGGTGGTGCTTCTTTTGCTGACACGTTGAGTGCCGCAACGGCTGCTATCACCGCTGATCCCAATTTCACTGCTGCGCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAACCCATTCCAATAATAATAGCAACACCAATACCACTAATAATACAACAACAAACAACAACGGAAGCAGCAACAACAACAGCAAAATTAGCAGTTTTCCTGGAAATTAA 1872 46.74 MDKGWGLTLRDSEHQSIGFFSNKPPPPPPPPTLNSFQRMFQGLEFSGKLGHTDSTPDDNNRLAVEVDFFSAKKRVVDDLEADQDSKPTSTTSIIKDDKALTPPPPPTTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLHMHLLSLMQQKQQQQNHPSEPAHQREIGGEKKSTEIKHEVGKVMVPRQFMDLGPSGNSNIGESEELLCNSSSDERTRSGSPLNINNNNNNTETASKKRDHAEIMPPNSDHENSKRSIPREDSPESESQGWGPNHKTPRFNNSSNSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSTSMATISASAPFPTITLDLTHTPNPLQFQRPTAAPFQVPFPGGQPPSAAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPASPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGTHSNNNSNTNTTNNTTTNNNGSSNNNSKISSFPGN* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28610615 28613553 + CsaV3_6G048830.1 Csa06g03497 535124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03497 623 MobiDBLite consensus disorder prediction 123 143 - -
Csa06g03497 623 Pfam WRKY DNA -binding domain 353 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03497 623 MobiDBLite consensus disorder prediction 305 336 - -
Csa06g03497 623 SUPERFAMILY WRKY DNA-binding domain 344 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g03497 623 Coils Coil 141 175 - -
Csa06g03497 623 Gene3D WRKY domain 336 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g03497 623 MobiDBLite consensus disorder prediction 202 223 - -
Csa06g03497 623 SMART WRKY_cls 351 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03497 623 MobiDBLite consensus disorder prediction 534 551 - -
Csa06g03497 623 MobiDBLite consensus disorder prediction 272 301 - -
Csa06g03497 623 MobiDBLite consensus disorder prediction 188 345 - -
Csa06g03497 623 MobiDBLite consensus disorder prediction 14 35 - -
Csa06g03497 623 MobiDBLite consensus disorder prediction 534 556 - -
Csa06g03497 623 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 598 IPR044810 GO:0003700
Csa06g03497 623 MobiDBLite consensus disorder prediction 80 107 - -
Csa06g03497 623 PANTHER WRKY TRANSCRIPTION FACTOR 6 46 598 - -
Csa06g03497 623 MobiDBLite consensus disorder prediction 231 271 - -
Csa06g03497 623 MobiDBLite consensus disorder prediction 587 623 - -
Csa06g03497 623 ProSiteProfiles WRKY domain profile. 346 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01879 Csa-Chr3:14489815 Csa06g03497 Csa-Chr6:28610615 7.65E-39 dispersed
Csa06g03497 Csa-Chr6:28610615 Csa01g00472 Csa-Chr1:2993098 5.56E-13 dispersed
Csa06g03497 Csa-Chr6:28610615 Csa07g00347 Csa-Chr7:2571163 6.21E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32181 PF03106 WRKY 5.60E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03497 - - csv:101222214 1118.22