Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03509 ATGGGGAGGAAGAAGCTGAGGCTGCAAAATCAAGGCTCCCATGTTAGTTTAGAGCTCTGTGACTCTTATTTTCTTGTGAACATGTTCTATGTAATCCATGTTATATTGGACAACGGGTTGTTGAAGGTGACGATATCAAACCCCCAAGGGTATGTAATTGGCATCACGTATGGAGGCATGGACAATCTATTAGATGTAAAATCAAGTGAATCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTTAAGGGATCTGAATTCAATGTCATCAACTCAAGTGATGACACGATTGAAATATCATTCAGGAAAGATTTTGACCTGTCAACTCGAGGCAACAAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAATGTCGAGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAGCTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCGTCCAGGCAGAGGTGAAGAACTAATTGTACCTGAGTCAGTTTTGCTTGTAAATCCCATTAACCCCGATTTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGGAGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACAAAGCAAAATCTGACAGTCCATACTGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATCAAGGAGGGAGAGGCGTGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATCTATGGATAGATGCAAAAGAACAGAGAATGCAAGAGGAAACAGCATGGCCATACAATTTTGTTGCTTCATCTTTTTATTTAATGGCAAGGGAACGTGGTTCAATTTCAGGAAGACTATTAGTCCGAGATAGGTTTGTTTCAAGTTCCCCTATCCCTGCAAGAGATGCACATATTGGTCTATCTGCTGCTAGAGAAGAAGGTGCCTGGCAAATCGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAATGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCCGGATTCATTGGTGACTATCTTCACAAATCACTAGTAACAGTATCTGCAGGATCTTATAACCATCTTGGCATTCTGACCTATAGTCCTCCCAGAGACGGTCCTACTGTATGGGAGATTGGTTTTCCTGATCGTACTGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGTTATTCCTTCATAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACAGCGATTTACATCCAAGAAATGACCAAATTTTCACCGTGGGTATCAACGATCCGAAAAAAGATTGGTTCTTTGCTCAAGTTTGCAGAAGAGGGGAAGATGGTAAGTATGTTGCGACTACATGGACTATTAAGTTCAACATGACATCCTTAACTGATGGAACTTACAGGCTGAGGTTGTCCATTGCATCTGCAACACGCTCGGATTTGAAGATTAATGTCAACTCGATGGGGTCAGAGTCATCTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACGGTTTGTCGACATGGAAATCATGGATTGTATCGAATTTATAGCATCGACATTCCATCTTCAATGCTAGTTAAGGGAGATAATTGCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAATTTTATACGATTATTTAAGATTGGAAGCACCTGATGCTACTCCATGA 1968 41.62 MGRKKLRLQNQGSHVSLELCDSYFLVNMFYVIHVILDNGLLKVTISNPQGYVIGITYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINSSDDTIEISFRKDFDLSTRGNKLPLGVDIRYIMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLRPGRGEELIVPESVLLVNPINPDLKGEVDDKYQYSEDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGEAWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRMQEETAWPYNFVASSFYLMARERGSISGRLLVRDRFVSSSPIPARDAHIGLSAAREEGAWQIESKEYQFWVKTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSYNHLGILTYSPPRDGPTVWEIGFPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYSDLHPRNDQIFTVGINDPKKDWFFAQVCRRGEDGKYVATTWTIKFNMTSLTDGTYRLRLSIASATRSDLKINVNSMGSESSLVFQLMNLGMDNTVCRHGNHGLYRIYSIDIPSSMLVKGDNCIFLTQARNGDPLCGILYDYLRLEAPDATP* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28655208 28658772 + CsaV3_6G048950.1 Csa06g03509 535136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03509 655 Gene3D - 458 648 - -
Csa06g03509 655 CDD RGL4_N 33 318 - -
Csa06g03509 655 Pfam Polysaccharide lyase family 4, domain III 460 648 IPR029411 -
Csa06g03509 655 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 37 652 - -
Csa06g03509 655 Pfam Rhamnogalacturonate lyase family 33 219 IPR010325 -
Csa06g03509 655 SUPERFAMILY Galactose-binding domain-like 457 649 IPR008979 -
Csa06g03509 655 Pfam Polysaccharide lyase family 4, domain II 380 444 IPR029413 -
Csa06g03509 655 SUPERFAMILY Galactose mutarotase-like 36 313 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa06g03509 655 CDD RGL4_C 462 649 - -
Csa06g03509 655 Gene3D - 30 322 IPR014718 GO:0030246
Csa06g03509 655 SUPERFAMILY Starch-binding domain-like 347 449 IPR013784 GO:0030246
Csa06g03509 655 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 37 652 - -
Csa06g03509 655 Gene3D - 348 449 - -
Csa06g03509 655 CDD RGL4_M 351 448 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04505 Csa-Chr3:39279931 Csa06g03509 Csa-Chr6:28655208 0 dispersed
Csa06g03096 Csa-Chr6:26531028 Csa06g03509 Csa-Chr6:28655208 9.80E-179 dispersed
Csa06g03509 Csa-Chr6:28655208 Csa02g02193 Csa-Chr2:19725119 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03509 K18195 - csv:101220336 1315.44