Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03519 | ATGGCTTGCTCAAAATTGGCAATGTGGGTATCCTCAAAACCGTCTTCATCCGATTCCTCTGCTCTTTCTTTCCGGCCAGTCAATCCTTTTCGAGTTCCTTCCCACGGCTCCGCCTCGCGATCCTCATCTGTCACTCCCATTCAGTGCGGTCTACGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAATCTCTAGTTGAAGTACTTTACAATATCAATGAGCAGCTCCAAACCGAGGATATAGATGTTCCTCTGACTAAAGTTCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTCTGCGGCGGTTTCAATAACATGATCATAAAAAAGGCAGAATCTAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAATTATTAGCGTCGGCAAGAAGGGGAATTCGTATTTTTTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTCCCAACAGCCAAAGAAGCTCAAGCCATTGCAGATGATGTTTTTTCTCTCTTTATAAGCGAAGAGGTTGACAAAGTCGAGCTTTTGTACACCAAATTCGTGTCATTAGTTAAATCAAACCCTGTGATCCACACTTTGCTTCCATTGTCACCTAAAGGAGAGATCTGTGATATAAATGGTGTTTGTGTTGATGCCGCAGAGGATGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCCGTGAGGACAAAAACTTCAGATTTCTCCCCAATTTTGCAGTTTGAGCAAGATCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGATCATTGCAGGAATCGTTAGCTAGTGAACTTGCTGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCCAGCGAGTTGAAGAAGACATTGTCTATTGTTTACAACAGACAGCGGCAAGCCAAAATCACTGGCGAGATTTTGGAGATTATTGCCGGTGCCAACGCTTTGACTTGA | 1116 | 43.73 | MACSKLAMWVSSKPSSSDSSALSFRPVNPFRVPSHGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGGFNNMIIKKAESRIAELKTLGLDYTIISVGKKGNSYFFRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSNPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIIAGANALT* | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28692844 | 28694824 | - | CsaV3_6G049050.1 | Csa06g03519 | 535146 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03519 | 371 | Pfam | ATP synthase | 51 | 370 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 50 | 117 | - | - | |
Csa06g03519 | 371 | Hamap | ATP synthase gamma chain [atpG]. | 48 | 370 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | PANTHER | ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC | 1 | 370 | - | - | |
Csa06g03519 | 371 | TIGRFAM | ATPsyn_F1gamma: ATP synthase F1, gamma subunit | 50 | 370 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 268 | 370 | - | - | |
Csa06g03519 | 371 | Coils | Coil | 51 | 71 | - | - | |
Csa06g03519 | 371 | Gene3D | - | 118 | 241 | - | - | |
Csa06g03519 | 371 | ProSitePatterns | ATP synthase gamma subunit signature. | 356 | 369 | IPR023632 | - | |
Csa06g03519 | 371 | CDD | F1-ATPase_gamma | 51 | 367 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 370 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 50 | 370 | IPR035968 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | PRINTS | ATP synthase gamma subunit signature | 122 | 141 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | PRINTS | ATP synthase gamma subunit signature | 215 | 232 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | PRINTS | ATP synthase gamma subunit signature | 317 | 336 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Csa06g03519 | 371 | PRINTS | ATP synthase gamma subunit signature | 348 | 369 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g01075 | Csa06g03519 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00512 | Csa-Chr3:4279414 | Csa06g03519 | Csa-Chr6:28692844 | 8.97E-156 | dispersed | |
Csa01g01075 | Csa-Chr1:6678624 | Csa06g03519 | Csa-Chr6:28692844 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03519 | K02115 | - | csv:101218747 | 701.434 |