Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03519 ATGGCTTGCTCAAAATTGGCAATGTGGGTATCCTCAAAACCGTCTTCATCCGATTCCTCTGCTCTTTCTTTCCGGCCAGTCAATCCTTTTCGAGTTCCTTCCCACGGCTCCGCCTCGCGATCCTCATCTGTCACTCCCATTCAGTGCGGTCTACGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAATCTCTAGTTGAAGTACTTTACAATATCAATGAGCAGCTCCAAACCGAGGATATAGATGTTCCTCTGACTAAAGTTCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTCTGCGGCGGTTTCAATAACATGATCATAAAAAAGGCAGAATCTAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAATTATTAGCGTCGGCAAGAAGGGGAATTCGTATTTTTTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTCCCAACAGCCAAAGAAGCTCAAGCCATTGCAGATGATGTTTTTTCTCTCTTTATAAGCGAAGAGGTTGACAAAGTCGAGCTTTTGTACACCAAATTCGTGTCATTAGTTAAATCAAACCCTGTGATCCACACTTTGCTTCCATTGTCACCTAAAGGAGAGATCTGTGATATAAATGGTGTTTGTGTTGATGCCGCAGAGGATGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCCGTGAGGACAAAAACTTCAGATTTCTCCCCAATTTTGCAGTTTGAGCAAGATCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGATCATTGCAGGAATCGTTAGCTAGTGAACTTGCTGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCCAGCGAGTTGAAGAAGACATTGTCTATTGTTTACAACAGACAGCGGCAAGCCAAAATCACTGGCGAGATTTTGGAGATTATTGCCGGTGCCAACGCTTTGACTTGA 1116 43.73 MACSKLAMWVSSKPSSSDSSALSFRPVNPFRVPSHGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGGFNNMIIKKAESRIAELKTLGLDYTIISVGKKGNSYFFRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSNPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIIAGANALT* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28692844 28694824 - CsaV3_6G049050.1 Csa06g03519 535146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03519 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Csa06g03519 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 370 - -
Csa06g03519 371 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 50 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Csa06g03519 371 Coils Coil 51 71 - -
Csa06g03519 371 Gene3D - 118 241 - -
Csa06g03519 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Csa06g03519 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa06g03519 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01075 Csa06g03519 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00512 Csa-Chr3:4279414 Csa06g03519 Csa-Chr6:28692844 8.97E-156 dispersed
Csa01g01075 Csa-Chr1:6678624 Csa06g03519 Csa-Chr6:28692844 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03519 K02115 - csv:101218747 701.434