Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03530 ATGGAGTTAAAGGACGCCATTCTTCTTCTCTTTGCCTTCCTCTTCTTCTCCTTATGGTGGCGCTACTGGTCTGCTACCGGGGGCGGATCGAAGAATCTTCCACCTGGTCCACCTGGCTGGCCGATCGTCGGAAACCTCATCCAAGTTATCCTCCAGCGTCGTCCATTCATCTTCGTAGCACGCGATTTACGTGAAAAATATGGTCCCATTTTCACCATGCAAATGGGACAACGCACACTCATCATTGTGTCAAGTGCCGAACTCATTCACGAAGCTCTTGTGCAACGTGGACCCTTATTCGCCAGCCGCCCTGCAGACTCTCCCATCCGCCTTGTCTTTAGCGTCGGCAAATGCGCTGTCAACTCTGCCGAATACGGCCCTCTCTGGCGAACCCTCCGCCGCAACTTCGTTACGGAGTTAATCAATCCTACCAGAATCAAGCAGTGTAGCTGGATACGGAAGTGGGCCATAGAAAGCCATCTGGAAAGACTAAGAAAAGAGAATTCAGAGAAAGGATTCGTTGAGGTTATGAGTAACTGCCGGCTTTCAGTCTGTAGTATTCTCATCTGCATATGCTTTGGAGCCAAAATCCCGGAAGAAGAGATTAAAGTCATAGAGAGTATACTGAAGGATGTGATGTTGATTACATTGCCAAAGCTTCCGGACTTCTTGCCGATTCTGACGCCGTTGTTTGGGCGGCAGTTGAAGCAAGCGAAAGAGCTGAGGAGAAAACAGTTGGAGTGTTTGATTCCGTTGATAAGGAAGAGAAGGATGTTTATGGAGAGGAATGGGGATGAGAGTGTGAGGAAGGAGTTGCCGGAGATGGTTAGTCCGATGGGGGCGGCGTATCTTGATTCGCTTTTCGAACTGGAAACGCCGGGACGAGGGAGGTTGGGAGAGGAGGAACTGGTGACGCTTTGTTCGGAAGTTATTAATGCTGGAACTGACACGAGCGCGACGGCGTTGGAGTGGGCTTTGCTTCATTTGGTACAAGATCAAGACGTTCAGGAAAGACTATACAATGAAATTATTAACGTTGTTGGTAAAGATGGGCTAATTACCGAAGGGGACATAGAGAAAATGCCATATCTCGGGGCGGTGGTAAAAGAGACTTTCCGTCGTCACCCACCAAGTCATTTCTTACTATCTCACGCGGCAACCAAAGAAACCGAGCTCGGCGGCTACACAATCCCGGCGGATGCCAGCGTGGAGTTTTACACAGCCCACTTGACAGAAGACCCGAACACATGGGAAGAACCGGGTTCATTCCGACCGGACAGGTTCTTGGAAGGCGACGGCGTTGGCGTGGACGTCACAGGGACTAAGGCCGTCAAGATGGTACCGTTCGGGGCAGGGCGGCGAATCTGCCCGGCCATGACTTTGGGCACGTTGCATGTTCACATGATGCTGGCCAAAATGGTACACGCGTTCAAGTGGGTCCCGGTTCCCGGAGCCCCGCCGGACCCGACCGAGACATTTGCCTTTACCGTGATTATGAAGAATCCTCTGAAGGCTATCGTATTGGACCGGACTCGTTTATGA 1542 51.23 MELKDAILLLFAFLFFSLWWRYWSATGGGSKNLPPGPPGWPIVGNLIQVILQRRPFIFVARDLREKYGPIFTMQMGQRTLIIVSSAELIHEALVQRGPLFASRPADSPIRLVFSVGKCAVNSAEYGPLWRTLRRNFVTELINPTRIKQCSWIRKWAIESHLERLRKENSEKGFVEVMSNCRLSVCSILICICFGAKIPEEEIKVIESILKDVMLITLPKLPDFLPILTPLFGRQLKQAKELRRKQLECLIPLIRKRRMFMERNGDESVRKELPEMVSPMGAAYLDSLFELETPGRGRLGEEELVTLCSEVINAGTDTSATALEWALLHLVQDQDVQERLYNEIINVVGKDGLITEGDIEKMPYLGAVVKETFRRHPPSHFLLSHAATKETELGGYTIPADASVEFYTAHLTEDPNTWEEPGSFRPDRFLEGDGVGVDVTGTKAVKMVPFGAGRRICPAMTLGTLHVHMMLAKMVHAFKWVPVPGAPPDPTETFAFTVIMKNPLKAIVLDRTRL* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28747373 28750307 - CsaV3_6G049160.1 Csa06g03530 535157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03530 513 Gene3D Cytochrome P450 25 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Csa06g03530 513 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 508 - -
Csa06g03530 513 Pfam Cytochrome P450 34 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 SUPERFAMILY Cytochrome P450 34 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03530 513 PANTHER CYTOCHROME P450 LIKE PROTEIN 4 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00409 Csa-Chr6:3567044 Csa06g03530 Csa-Chr6:28747373 4.54E-159 dispersed
Csa06g03530 Csa-Chr6:28747373 Csa02g02817 Csa-Chr2:24509116 1.33E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03530 K21995 - csv:101216852 1024.62