Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03531 ATGATCTCTTCACTGAGGCTTACATCTTCCCATTTCAATTCCACTGAAATTGTCAACAGAAAATCTCAACTTCTAAGGCCGAACATACCGTTGCAGTCCCCAGATTGCAGTGTTCTTAAACATGTCGATCGATCTTTTTTAACCAATAAACCACTTCACATCTCGTCGGTTGAAAATCTTTCTTTGCTCACAAAATCATCTGAGCGTTCCACGGTGTGCAGGGCTTATGAGGCAGAATCGCGACGTCTGCAAATTAACATTGAGCTTCCTGATGAACAGACGACTCAGAAACTCAAAATTGCGCTCTATTTCGCCGCTTGGTGGGCTTTGAATGTTGTGTTCAATGTCTATAACAAGAAGGTTCTTAATGCCTTCCCTTATCCTTGGCTCACCTCTACTCTCTCCCTCGCCGCTGGATCGCTTATGATGCTTGTTTCTTGGACCACTCGAATGGTCGACGCTCCCAAAACCGATTTGGATTTCTGGAAATCTCTATTGCCGGTCGCAGTGGCACATACAATTGGCCATGTTGCAGCAACTGTAAGCATGTCCAAGGTCGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTCAGTGTTTTGGTCTCTAGGTTTTTGTTGGGTGAGATGTTTCCATTGCCCGTGTACTTATCTCTAATCCCAATCATTGGAGGCTGCGCTCTTTCCGCCATTACTGAGCTCAATTTTAACATAATTGGTTTCTCGGGTGCGATGATATCAAACTTGGCATTTGTATTTAGAAACATATTCTCAAAGAAAGGGATGAAAGGAAAGTCAGTGAGTGGGATGAATTACTATGCTTGTCTCTCATTGTTGTCTCTGCTCATTCTTACTCCTTTCGCCATTGCCGTGGAGGGACCCAAGTTGTGGGCTGAAGGACTCCAAAACGCTCTCGCTCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCACCATTGACATTCAGCGTGGGTAACACAATGAAGAGAATATTCGTAATAGTGTCGTCCATTATCATCTTCCACACGCCGATCCGACCCGTGAACGGGATTGGAGCTGCCATTGCAATCCTTGGAACTTTCCTCTACTCGCAGGCAAAGCTGTGA 1176 44.64 MISSLRLTSSHFNSTEIVNRKSQLLRPNIPLQSPDCSVLKHVDRSFLTNKPLHISSVENLSLLTKSSERSTVCRAYEAESRRLQINIELPDEQTTQKLKIALYFAAWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWTTRMVDAPKTDLDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAITELNFNIIGFSGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGLQNALAQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPIRPVNGIGAAIAILGTFLYSQAKL* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28754571 28757085 - CsaV3_6G049170.1 Csa06g03531 535158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03531 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 285 388 - -
Csa06g03531 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
Csa06g03531 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Csa06g03531 391 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 98 390 IPR004696 GO:0016021|GO:0022857|GO:0055085
Csa06g03531 391 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 37 390 - -
Csa06g03531 391 PANTHER SOLUTE CARRIER FAMILY 35 37 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03356 Csa-Chr1:30125950 Csa06g03531 Csa-Chr6:28754571 0 dispersed
Csa06g03531 Csa-Chr6:28754571 Csa04g01806 Csa-Chr4:17700350 4.08E-24 dispersed
Csa05g02508 Csa-Chr5:26685270 Csa06g03531 Csa-Chr6:28754571 2.86E-73 transposed
Csa03g00996 Csa-Chr3:8059633 Csa06g03531 Csa-Chr6:28754571 2.62E-100 transposed
Csa03g00529 Csa-Chr3:4405822 Csa06g03531 Csa-Chr6:28754571 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03531 K15283 - csv:101216621 733.406