Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03532 ATGTTCGATCCAGATATGTTTGATACTACTCACCATCATATGCTTGAAGAGTTGGAAAATATGAGAGACGATGATTTTGACAACAAATCAGGTGCAGAAATCTTGGAATCTGCTTGTGGAACTGACCAACAACAACAACGTTCTAAAAAGAAACGTTACAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCTCACCCAGATGATAAGCAGAGAATGGAGCTGAGTCGTGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAAAACAAACGCACACAAATGAAGGCTCAACACGAGAGACATGAAAACGCAATATTGAAGGCGGAAAATGAGAAACTTCGTGCTGAGAATATCCGCTATAGAGAAGCATTCGCTCATTCAACTTGCCCTAACTGCGGATCTTCCTCCACTGCACTCGGGGAAATGTCCTTTGACGACCAACATTTACGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGCTCAAAATGCACAAAGCCATACTATCAGCTTCCAACAAATGCTCCAACGCGATCTTTAGACCTGGGCATCACTAACTTCGGTCCACAGTCGTCAGGATTCGTAGGGGAAATGTATGGAGCAGCAGATTTTTTCCGGTCGATATCGAGGCCTTCGGAAGGTGAGAAACCGGTGATCGTGGAGCTGGCGGTATCGGGGATGGAGGAGTTGAGGAGAATGGCTCAGGGAGGGGAGCCGTTGTGGGTTGCGGGAGATGGGAAGTCATCAGGGGAAGTGGTTCTTAATGAGGCGGAGTATCTGAGGAGTTTCGGAGGGGGAATAGTGGGAAAGCCGATGGGCTTTAGAACCGAAGCTTCACGAGTTTCGGCTGTGGTGTTCATGAACCATATGAAGTTGGTGGATATTTTTATGGATGCTACGCAATGGTCCACTGTGTTTTGTGGCATTGTTTCGAGAGCCTCCACTGTGGAAATTCTTTCGCCTGGCTTACCTGGAAACTTCAATGGGGCCTTGCATGTGATGAGCGCTGAATTTCAAGTCCCATCGCCACTTGTTCCAACTCGTGAAAACTATTTCGTAAGATACTGCAAACAACAAACTGATGGTTCATGGGCTGTGGCTGATGTTTCCTTAGACACCTTGCGCCCTTCTCCCATCCCAAATACCCGAAGGAAACCCTCTGGTTGCTTAATTCAAGAATTACCCAACGGCTATTCCAAGATCACCTGGGTCGAACATGTAGAAGTCGACGAAACTGGCGTCCCCACAATGTACAGGACTCTTGTTAATTCCGGCCTCGCTTTCGGGGCTAAGAGATGGGTTGCTACCTTAGATCGCCAATCTGAGCGTTTCGCTACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTGATCTCAAGTATTGAAGGGAGGAAGAGTATGCTGAAACTAGCAGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTAGGTGCGTCCAGTGTACACGCTTGGACGGCATTACCCGCTGCAGCTGGCGATGAAGTACGTGTTGTGACGAGGAAGAGCACTGACGAACCAGGACGACCACCAGGTGTTGTGTTGAGCGCCGCCACTTCTTTTTGGATTCCAGTTTCACCTAAGGTTGTTTTTGATTTTCTTCGAAAAGAGAAATCTCGGAGCGAGTGGGATATTCTGTCAAATGGGGGATTGGTTCAGGAAATGGCGCACATAGCCAACGGCCGTCACTCAGGGAATTGTGTCTCCTTGCTTCGTGTTAATAGTGCGAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACGGACTCAACAGGATCGTACGTTATTTATGCTCCGGTGGACACCGTGGCAATGAACGTGGTGCTAAGTGGTTGCGATCCGGATTACGTGGCGCTTCTACCGTCGGGATTCGCCATACTTCCTGACGGACCCGGCGGAGGAGGAAACAACGGCGGCGGCATTCTAGAGCTGGGATCGGGTGGGTCACTCATCACGGTTGCATTTCAAATCCTGGTTGATTCGGTTCCAACGGCTAGACTTTCAATTGGATCAGTAGCCACCGTTAACAGTCTCATCAAATGCACGGTTGAGAGAATCAGAGCCGCTGTGATGCGTGAAAACCCATGA 2166 48.66 MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGTDQQQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLDLGITNFGPQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSGEVVLNEAEYLRSFGGGIVGKPMGFRTEASRVSAVVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQTDGSWAVADVSLDTLRPSPIPNTRRKPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRTLVNSGLAFGAKRWVATLDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGGGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP* 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28760373 28766391 - CsaV3_6G049180.1 Csa06g03532 535159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03532 721 Pfam Homeodomain 50 105 IPR001356 GO:0003677
Csa06g03532 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 14 718 - -
Csa06g03532 721 Coils Coil 101 133 - -
Csa06g03532 721 SMART HOX_1 48 111 IPR001356 GO:0003677
Csa06g03532 721 MobiDBLite consensus disorder prediction 36 57 - -
Csa06g03532 721 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Csa06g03532 721 SUPERFAMILY Homeodomain-like 40 107 IPR009057 -
Csa06g03532 721 CDD homeodomain 49 108 IPR001356 GO:0003677
Csa06g03532 721 Gene3D - 37 123 - -
Csa06g03532 721 Gene3D - 287 459 IPR023393 -
Csa06g03532 721 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Csa06g03532 721 SUPERFAMILY Bet v1-like 231 460 - -
Csa06g03532 721 SMART START_1 237 459 IPR002913 GO:0008289
Csa06g03532 721 SUPERFAMILY Bet v1-like 481 713 - -
Csa06g03532 721 ProSiteProfiles START domain profile. 228 462 IPR002913 GO:0008289
Csa06g03532 721 CDD START_ArGLABRA2_like 232 458 - -
Csa06g03532 721 Pfam START domain 239 459 IPR002913 GO:0008289
Csa06g03532 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 718 IPR042160 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01099 Csa06g03532 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02627 Csa-Chr3:24787450 Csa06g03532 Csa-Chr6:28760373 3.81E-19 dispersed
Csa07g02448 Csa-Chr7:22354861 Csa06g03532 Csa-Chr6:28760373 5.22E-26 dispersed
Csa01g01099 Csa-Chr1:6814980 Csa06g03532 Csa-Chr6:28760373 0 wgd
Csa02g02688 Csa-Chr2:23428044 Csa06g03532 Csa-Chr6:28760373 0 wgd
Csa06g03532 Csa-Chr6:28760373 Csa07g00370 Csa-Chr7:2759169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32183 PF01852 START 1.60E-48 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03532 K09338 - csv:101209093 1420.22